Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_F05
(607 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 289 3e-79
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 289 3e-79
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 186 2e-48
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 82 7e-17
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 34 0.019
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 27 1.6
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 27 2.1
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 27 2.8
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 26 4.9
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe... 26 4.9
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 25 6.5
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual 25 8.6
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc... 25 8.6
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 8.6
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 8.6
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 289 bits (708), Expect = 3e-79
Identities = 132/199 (66%), Positives = 156/199 (78%)
Frame = +3
Query: 9 KSPNKHNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEARKIWCFG 188
KSPNKHNR+FM A+PM E L I+ G VNPRDDFK RAR ++D++ +D+T+ARKIWCFG
Sbjct: 578 KSPNKHNRIFMTAEPMSEELSVAIETGHVNPRDDFKVRARIMADEFGWDVTDARKIWCFG 637
Query: 189 PEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGAMAEENLRGVRFNIYDVTLHTDA 368
P+ TG N++VD +K V YLNEIKDSVVA F WA+KEG M EENLR RFNI DV LH DA
Sbjct: 638 PDTTGANVVVDQTKAVAYLNEIKDSVVAAFAWASKEGPMFEENLRSCRFNILDVVLHADA 697
Query: 369 IHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEE 548
IHRGGGQIIPT RR +YA L A P + EPV+L EIQ E A+GGIY VLN++RGHVF E
Sbjct: 698 IHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVFSE 757
Query: 549 SQVAGTPMFVVKAYLPVNE 605
Q GTP++ +KAYLPVNE
Sbjct: 758 EQRVGTPLYNIKAYLPVNE 776
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 289 bits (708), Expect = 3e-79
Identities = 132/199 (66%), Positives = 156/199 (78%)
Frame = +3
Query: 9 KSPNKHNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEARKIWCFG 188
KSPNKHNR+FM A+PM E L I+ G VNPRDDFK RAR ++D++ +D+T+ARKIWCFG
Sbjct: 578 KSPNKHNRIFMTAEPMSEELSVAIETGHVNPRDDFKVRARIMADEFGWDVTDARKIWCFG 637
Query: 189 PEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGAMAEENLRGVRFNIYDVTLHTDA 368
P+ TG N++VD +K V YLNEIKDSVVA F WA+KEG M EENLR RFNI DV LH DA
Sbjct: 638 PDTTGANVVVDQTKAVAYLNEIKDSVVAAFAWASKEGPMFEENLRSCRFNILDVVLHADA 697
Query: 369 IHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEE 548
IHRGGGQIIPT RR +YA L A P + EPV+L EIQ E A+GGIY VLN++RGHVF E
Sbjct: 698 IHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVFSE 757
Query: 549 SQVAGTPMFVVKAYLPVNE 605
Q GTP++ +KAYLPVNE
Sbjct: 758 EQRVGTPLYNIKAYLPVNE 776
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 186 bits (454), Expect = 2e-48
Identities = 86/200 (43%), Positives = 125/200 (62%), Gaps = 4/200 (2%)
Frame = +3
Query: 12 SPNKHNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEARKIWCFGP 191
+PNK NR+ M +P+ +G+ DI++GKVN K + + Y++DL +R IW FGP
Sbjct: 691 TPNKKNRITMVVEPLEKGISNDIENGKVNINWPQKRISEFFQKNYDWDLLASRSIWAFGP 750
Query: 192 EGTGPNILVDCSKGVQY----LNEIKDSVVAGFQWAAKEGAMAEENLRGVRFNIYDVTLH 359
+ G NIL D + LN +K+ + GFQW +EG + +E +R V F + DV L
Sbjct: 751 DDRGTNILRDDTLSTDVDKNVLNSVKEYIKQGFQWGTREGPLCDETIRNVNFRLMDVVLA 810
Query: 360 TDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHV 539
+ I+RGGGQIIPT RR Y+ LTA PRLMEPVY+ E+ P ++ IY +L RRRGHV
Sbjct: 811 PEQIYRGGGQIIPTARRVCYSSFLTASPRLMEPVYMVEVHAPADSLPIIYDLLTRRRGHV 870
Query: 540 FEESQVAGTPMFVVKAYLPV 599
++ G+P+++V+A +PV
Sbjct: 871 LQDIPRPGSPLYLVRALIPV 890
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1000
Score = 81.8 bits (193), Expect = 7e-17
Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 24/191 (12%)
Frame = +3
Query: 105 DDFKTRARYLSDKYEYDLTEARK----IWCFGPEGTGPNILVDCSKGVQYL--------- 245
+ F R L ++ DL E + I FGP+ GPNIL D +K ++
Sbjct: 724 EKFYERLSKLLEEENSDLGELKNHLDSIIAFGPKRVGPNILFDKTKKMRDFRRQSDETKL 783
Query: 246 --NEIKDSVVAGFQWAAKEGAMAEENLRGV-----RFNIYDVTLHTDAIHRGG----GQI 392
+++ + VV FQ +G + E ++G+ +F+I D + + + GQ+
Sbjct: 784 IPSDLSEYVVTAFQLITHQGPLCAEPVQGICVSIDQFDISDDSEDSKLLTINNPQIPGQV 843
Query: 393 IPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPM 572
I + + L PRLM +Y C++Q +G +YGV+++RRG V +E GTP
Sbjct: 844 ISVVKESIRHGFLGWSPRLMLAMYSCDVQATSEVLGRVYGVVSKRRGRVIDEEMKEGTPF 903
Query: 573 FVVKAYLPVNE 605
F+VKA +PV E
Sbjct: 904 FIVKALIPVVE 914
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 33.9 bits (74), Expect = 0.019
Identities = 25/109 (22%), Positives = 45/109 (41%)
Frame = +3
Query: 276 FQWAAKEGAMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLME 455
F A K+G + ++ RF + D H ++ T L A P ++E
Sbjct: 619 FYEALKKGFLIGHPIKNCRFVLEDGAYHPVDSSELAFRL--ATISAFRTAFLQANPMVLE 676
Query: 456 PVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFVVKAYLPVN 602
P+ I P GG+ G L++R+ + + F ++A +P+N
Sbjct: 677 PIMNVSITAPVEHQGGVIGNLDKRKATIVDSD--TDEDEFTLQAEVPLN 723
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 296 FLGGPLEPGDDRVLDLVQVLHTL 228
F+G PL PGD V LV+++ L
Sbjct: 220 FIGRPLFPGDSSVEQLVEIIRVL 242
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 66 LPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEARK 173
LPE ID+GK++ DD KT + D + K
Sbjct: 194 LPEKIDEGKLSDVDDGKTYICWRGDSQYVSINRLEK 229
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +3
Query: 156 LTEARKIWCFGPEGTGPNILVD--CSKGVQYLNE 251
L E + GP G+G ++LVD S+ Q +NE
Sbjct: 572 LGEGNSVIIVGPRGSGKSVLVDDILSRAAQEINE 605
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 25.8 bits (54), Expect = 4.9
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +3
Query: 393 IPTTRRCLYACLLTAQPRLMEPVYL-CEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTP 569
IP T RC+ + + + P+L P L + CP + + V+ H F + P
Sbjct: 386 IPNTERCILSAFICSPPQLPLPNPLRMYLPCPSLNSTEV-SVITLAPQHSFLNIVINLNP 444
Query: 570 MFVVKAY 590
+K+Y
Sbjct: 445 ALALKSY 451
>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 422
Score = 25.8 bits (54), Expect = 4.9
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -3
Query: 293 LGG-PLEPGDDRVLDLVQVLHTLRAVDEDVRSGALGAEAPDLTR 165
LGG PL G D V L +LH L DE+ S + A + R
Sbjct: 223 LGGTPLFKGKDFVHQLNLILHQLGTPDEETLSHISSSRAQEYVR 266
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 403 VVGMI*PPPL*MASV*RVTS*MLNRTPLKFSSAMAPSLAA 284
V G+ PPPL + S+ + + + + FS A+ PSL A
Sbjct: 305 VKGVTTPPPLEVISIDHLPTLLPRESSEAFSEALIPSLLA 344
>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 70 GRPSGMGWAFMKRRLCLL 17
G P G+ WA M R+C L
Sbjct: 228 GFPGGVAWAMMVARICQL 245
>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 493 ATSGHWISQRYTGSISLGCAVNRHAYR 413
A +G +IS YTG+ +L V RH R
Sbjct: 437 ANTGDYISDLYTGTPALKGDVTRHGTR 463
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +3
Query: 78 IDDGKVNPRDDFKTRARYLSDKYEYDLTEARKIWCFGPEGTGPNIL 215
+++ K R+ + Y + +T ++ + FGP GTG +L
Sbjct: 502 LEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTGKTLL 547
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 9 KSPNKHNRLFMKAQPMPEGL 68
KS KHN+L K +P+P L
Sbjct: 245 KSVKKHNKLVKKHKPLPSTL 264
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,621
Number of Sequences: 5004
Number of extensions: 43618
Number of successful extensions: 134
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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