Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_F05
         (607 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    29   0.15 
AF487536-1|AAL93297.1|  504|Anopheles gambiae cytochrome P450 CY...    24   4.4  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    24   4.4  

>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 28.7 bits (61), Expect = 0.15
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
 Frame = -1

Query: 352 VTS*MLNRTPLKFSSAMAPSLAAHWNPATTESLISFRYCTPLEQ-----STRMLGPVPSG 188
           VTS +L+R     SSA +P+L+++ +  ++ S     Y  P +Q       +  GP+PS 
Sbjct: 195 VTSPVLSR----ISSASSPNLSSNGSTLSSPSGSRMEYLLPHQQHPPGAGVQGAGPIPSQ 250

Query: 187 PKHQ 176
            KHQ
Sbjct: 251 QKHQ 254


>AF487536-1|AAL93297.1|  504|Anopheles gambiae cytochrome P450
           CYP6Y1 protein.
          Length = 504

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +3

Query: 111 FKTRARYLSDKYEYDLTEARKIWCFGPEGTGPNILV 218
           F    +Y  +++  D    R  +C+ P G GP + +
Sbjct: 413 FPEPEQYRPERFSPDEVARRDPYCYLPFGEGPRVCI 448


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
            chain protein.
          Length = 1024

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 342  YDVTLHTDAIHRGGGQIIPTTRRCL 416
            Y   +HT   H GGGQ +     CL
Sbjct: 936  YSFLMHTAVGHGGGGQSLSGPGSCL 960


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 590,659
Number of Sequences: 2352
Number of extensions: 12062
Number of successful extensions: 40
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 58870980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)