Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_F05
(607 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 355 1e-98
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 350 5e-97
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 189 1e-48
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 185 2e-47
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 51 6e-07
AL132865-7|CAB60598.1| 234|Caenorhabditis elegans Hypothetical ... 29 3.4
Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical pr... 28 4.5
U97004-6|AAO26010.1| 304|Caenorhabditis elegans Hypothetical pr... 28 4.5
U97004-5|AAO26009.1| 240|Caenorhabditis elegans Hypothetical pr... 28 4.5
U97004-4|AAB52276.1| 337|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z32683-10|CAA83625.1| 381|Caenorhabditis elegans Hypothetical p... 28 5.9
Z46794-3|CAA86783.1| 429|Caenorhabditis elegans Hypothetical pr... 27 7.9
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical protein
F25H5.4 protein.
Length = 852
Score = 355 bits (873), Expect = 1e-98
Identities = 157/199 (78%), Positives = 179/199 (89%)
Frame = +3
Query: 9 KSPNKHNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEARKIWCFG 188
KSPNKHNRL AQPMP+GL +DI+ G VN RD+FK RA+ L++KYEYD+TEARKIWCFG
Sbjct: 588 KSPNKHNRLHCTAQPMPDGLADDIEGGTVNARDEFKARAKILAEKYEYDVTEARKIWCFG 647
Query: 189 PEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGAMAEENLRGVRFNIYDVTLHTDA 368
P+GTGPN+L+D +KGVQYLNEIKDSVVAGFQWA +EG +++EN+RGVRFN++DVTLH DA
Sbjct: 648 PDGTGPNLLMDVTKGVQYLNEIKDSVVAGFQWATREGVLSDENMRGVRFNVHDVTLHADA 707
Query: 369 IHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEE 548
IHRGGGQIIPT RR YA +LTA+PRL+EPVYL EIQCPE AVGGIYGVLNRRRGHVFEE
Sbjct: 708 IHRGGGQIIPTARRVFYASVLTAEPRLLEPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEE 767
Query: 549 SQVAGTPMFVVKAYLPVNE 605
SQV GTPMFVVKAYLPVNE
Sbjct: 768 SQVTGTPMFVVKAYLPVNE 786
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 350 bits (860), Expect = 5e-97
Identities = 155/199 (77%), Positives = 177/199 (88%)
Frame = +3
Query: 9 KSPNKHNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEARKIWCFG 188
KSPNKHNRL AQPMP+GL +DI+ G V+ RD+FK RA+Y +KYEY +TEARKIWCFG
Sbjct: 588 KSPNKHNRLHCTAQPMPDGLADDIEGGTVSARDEFKARAKYPGEKYEYAVTEARKIWCFG 647
Query: 189 PEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGAMAEENLRGVRFNIYDVTLHTDA 368
P+GTGPN+L+D +KGVQYLNEIKDSVVAGFQWA +EG +++EN+RGVRFN++DVTLH DA
Sbjct: 648 PDGTGPNLLMDVTKGVQYLNEIKDSVVAGFQWATREGVLSDENMRGVRFNVHDVTLHADA 707
Query: 369 IHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEE 548
IHRGGGQIIPT RR YA +LTA+PRL+EPVYL EIQCPE AVGGIYGVLNRRRGHVFEE
Sbjct: 708 IHRGGGQIIPTARRVFYASVLTAEPRLLEPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEE 767
Query: 549 SQVAGTPMFVVKAYLPVNE 605
SQV GTPMFVVKAYLPVNE
Sbjct: 768 SQVTGTPMFVVKAYLPVNE 786
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 189 bits (461), Expect = 1e-48
Identities = 86/201 (42%), Positives = 129/201 (64%), Gaps = 4/201 (1%)
Frame = +3
Query: 9 KSPNKHNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEARKIWCFG 188
++PNK N++ M A+P+ + L EDI++ V + + + KY +DL AR IW FG
Sbjct: 681 ETPNKKNKITMMAEPLEKQLDEDIENEVVQIGWNRRRLGEFFQTKYNWDLLAARSIWAFG 740
Query: 189 PEGTGPNILVDCSKGVQY----LNEIKDSVVAGFQWAAKEGAMAEENLRGVRFNIYDVTL 356
P+ TGPNIL+D + + L+ +++S+V GFQWA +EG + EE +R V+F + D +
Sbjct: 741 PDTTGPNILLDDTLPSEVDKHLLSTVRESLVQGFQWATREGPLCEEPIRQVKFKLLDAAI 800
Query: 357 HTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGH 536
T+ ++RGGGQ+IPT RRC Y+ L A PRLMEP Y E+ P V +Y VL +RRGH
Sbjct: 801 ATEPLYRGGGQMIPTARRCAYSAFLMATPRLMEPYYTVEVVAPADCVAAVYTVLAKRRGH 860
Query: 537 VFEESQVAGTPMFVVKAYLPV 599
V ++ + G+PM+ + AY+PV
Sbjct: 861 VTTDAPMPGSPMYTISAYIPV 881
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 185 bits (451), Expect = 2e-47
Identities = 85/201 (42%), Positives = 128/201 (63%), Gaps = 4/201 (1%)
Frame = +3
Query: 9 KSPNKHNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEARKIWCFG 188
++PNK N++ M A+P+ + L EDI++ V + + + KY +DL AR IW FG
Sbjct: 556 ETPNKKNKITMMAEPLEKQLDEDIENEVVQIGWNRRRLGEFFQTKYNWDLLAARSIWAFG 615
Query: 189 PEGTGPNILVDCSKGVQY----LNEIKDSVVAGFQWAAKEGAMAEENLRGVRFNIYDVTL 356
+ TGPNIL+D + + L+ +++S+V GFQWA +EG + EE +R V+F + D +
Sbjct: 616 LDTTGPNILLDDTLPSEVDKHLLSTVRESLVQGFQWATREGPLCEEPIRQVKFKLLDAAI 675
Query: 357 HTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGH 536
T+ ++RGGGQ+IPT RRC Y+ L A PRLMEP Y E+ P V +Y VL +RRGH
Sbjct: 676 ATEPLYRGGGQMIPTARRCAYSAFLMATPRLMEPYYTVEVVAPADCVAAVYTVLAKRRGH 735
Query: 537 VFEESQVAGTPMFVVKAYLPV 599
V ++ + G+PM+ + AY+PV
Sbjct: 736 VTTDAPMPGSPMYTISAYIPV 756
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical protein
K10C3.5a protein.
Length = 894
Score = 51.2 bits (117), Expect = 6e-07
Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 12/157 (7%)
Frame = +3
Query: 171 KIWCFGPEGTGPNILVDCSKGVQY----------LNEIKDSVVAGFQWAAKEGAMAEENL 320
+IW FGPE NIL + + + ++VAGF+ G + E +
Sbjct: 653 QIWAFGPERARANILFNNVQNYDRDSVWRKTEFGVRRYDQALVAGFELFCNTGPLCNEIM 712
Query: 321 RGVRFNI--YDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVA 494
G+ + ++V AI GGQ++ + A RL+ +Y C + A
Sbjct: 713 HGIAVIVEEWNVDEEDGAI---GGQMMTAIKASCSAAAKKLALRLVAAMYRCTVTTASQA 769
Query: 495 VGGIYGVLNRRRGHVFEESQVAGTPMFVVKAYLPVNE 605
+G ++ VL++R+ V E T +F V + +PV E
Sbjct: 770 LGKVHAVLSQRKSKVLSEDINEATNLFEVVSLMPVVE 806
>AL132865-7|CAB60598.1| 234|Caenorhabditis elegans Hypothetical
protein Y62E10A.10 protein.
Length = 234
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +3
Query: 81 DDGKVNPRDDFKTRARYLSDKYEYDLTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKD 260
++G+ P+ F R +YL + L++A++ GP P+ + + KG +N I
Sbjct: 61 ENGRFLPKTSFNARRQYLCAEETGYLSKAQQRPAKGPNPMDPSQMTEMLKG-NMMNMIPM 119
Query: 261 SVVAGF 278
VV G+
Sbjct: 120 IVVGGW 125
>Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical protein
F22E10.2 protein.
Length = 1324
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +3
Query: 381 GGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRR 527
G Q + T RCL A +L + +M + + + A G ++ ++NR+
Sbjct: 1017 GDQTVDKTFRCLMAMMLCCEGIIMSAQFFPQFVGAKSAAGQMFNLINRQ 1065
>U97004-6|AAO26010.1| 304|Caenorhabditis elegans Hypothetical
protein R08E5.2c protein.
Length = 304
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +2
Query: 410 MPVRVSVDRAA--QAYGTRVPLRDPVSGGGG 496
MP +SV+R A +AYG V L DP G G
Sbjct: 98 MPATMSVERRAMLRAYGAEVILSDPAEGHPG 128
>U97004-5|AAO26009.1| 240|Caenorhabditis elegans Hypothetical
protein R08E5.2b protein.
Length = 240
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +2
Query: 410 MPVRVSVDRAA--QAYGTRVPLRDPVSGGGG 496
MP +SV+R A +AYG V L DP G G
Sbjct: 1 MPATMSVERRAMLRAYGAEVILSDPAEGHPG 31
>U97004-4|AAB52276.1| 337|Caenorhabditis elegans Hypothetical
protein R08E5.2a protein.
Length = 337
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +2
Query: 410 MPVRVSVDRAA--QAYGTRVPLRDPVSGGGG 496
MP +SV+R A +AYG V L DP G G
Sbjct: 98 MPATMSVERRAMLRAYGAEVILSDPAEGHPG 128
>Z32683-10|CAA83625.1| 381|Caenorhabditis elegans Hypothetical
protein R07E5.3 protein.
Length = 381
Score = 27.9 bits (59), Expect = 5.9
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = +3
Query: 132 LSDKYEYDLTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGAMAE 311
L D++E+D+++ PE NI + G ++++ I S+ QW + A +E
Sbjct: 271 LVDQFEWDMSDPNN----SPEEFSRNICKELGLGGEFMSGIAYSIRGQLQWNQRTYAFSE 326
Query: 312 ENLRGV 329
L V
Sbjct: 327 SPLATV 332
>Z46794-3|CAA86783.1| 429|Caenorhabditis elegans Hypothetical
protein R06F6.4 protein.
Length = 429
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +3
Query: 309 EENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQ 440
+ NL +++ TLH +HR IP R CLY C L AQ
Sbjct: 309 KRNLCEKLLDLFQDTLHDHNVHR-----IPVLR-CLYICSLAAQ 346
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,756,826
Number of Sequences: 27780
Number of extensions: 271203
Number of successful extensions: 941
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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