Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_F05
         (607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    28   0.082
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.3  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   5.4  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   5.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   7.1  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   7.1  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 27.9 bits (59), Expect = 0.082
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 186 GPEGTGPNILVDCSKGVQYLNEIKDSVVA 272
           GP   GP+ ++D + GV Y  +I  + +A
Sbjct: 294 GPNSQGPSSVIDTNTGVDYFTQINRNGIA 322


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = -3

Query: 386 TATSVNGVSVKGDVIN 339
           ++TS+N ++V+ DVIN
Sbjct: 862 SSTSINSITVEKDVIN 877


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 48  QPMPEGLPEDIDDGKVNPR 104
           +P+PE L ED+   +V PR
Sbjct: 20  KPLPENLKEDLIVYQVYPR 38


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 48  QPMPEGLPEDIDDGKVNPR 104
           +P+PE L ED+   +V PR
Sbjct: 20  KPLPENLKEDLIVYQVYPR 38


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 234 VQYLNEIKDSVVAGFQWAAKEGAMAEENLRGVRFNIYDV 350
           ++  N  K +++ GF   A +    E N +GV    Y+V
Sbjct: 524 IELANTFK-AIIYGFNVNATKQIKDEANKKGVSLRFYNV 561


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 492 AVGGIYGVLNRRR 530
           A GGIY + N+RR
Sbjct: 317 AEGGIYDISNKRR 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,564
Number of Sequences: 438
Number of extensions: 3100
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)