Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_F04
         (500 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1151 - 10822616-10823863                                         30   1.2  
01_07_0288 + 42534552-42534558,42535302-42537280,42537367-425375...    29   2.1  
01_02_0059 - 10701859-10701963,10702034-10702153,10702534-107026...    28   3.7  
12_02_0410 + 18701258-18701327,18701398-18701630,18701782-187026...    28   4.8  
09_04_0355 + 16922863-16924224                                         27   8.5  
07_03_1779 - 29458889-29459249,29461107-29461283,29461374-294615...    27   8.5  
07_03_1071 + 23753883-23754752                                         27   8.5  
04_04_0677 + 27195264-27195291,27196034-27196271,27196350-271965...    27   8.5  

>07_01_1151 - 10822616-10823863
          Length = 415

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 195 STHARRSTLPHPLSKIW-GRRHLSSLNLLSFRLKKSLSQ 82
           ST+ ++ T  HP+ KIW   R++SS N   F     L Q
Sbjct: 376 STNPKKKTSSHPMPKIWKSSRYVSSGNFRCFTSYSQLKQ 414


>01_07_0288 +
           42534552-42534558,42535302-42537280,42537367-42537513,
           42537982-42538526,42538906-42538981,42539357-42539437
          Length = 944

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = -3

Query: 240 SSPRSLQAVAACRETSTHARRSTLPHPLSKIWGRRHLSSLNLLSFRLKKSLSQHYPLSSP 61
           S  +SL +++   E STH+ R + PH       R  +SS  L S   K   S +    S 
Sbjct: 782 SQHKSLGSISEHSEVSTHSHRVSSPHDTELSNRRARISSDELFSASGKSDDSNNRDARSL 841

Query: 60  QN 55
           QN
Sbjct: 842 QN 843


>01_02_0059 -
           10701859-10701963,10702034-10702153,10702534-10702609,
           10702897-10703276
          Length = 226

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +1

Query: 121 QRRKMAAPPNLR*GVWKRGAAGVCRRLSTR 210
           +RRKMAA PN   GV  RG   +CR+   R
Sbjct: 12  RRRKMAAAPNFVVGVGGRGGQ-ICRQAPAR 40


>12_02_0410 +
           18701258-18701327,18701398-18701630,18701782-18702639,
           18703006-18703865,18704285-18704395,18704486-18704567,
           18704643-18704735,18704795-18704989
          Length = 833

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 177 SGGRVSTSLDTRPPPAATAGSCESATDESWR 269
           S GR  T     PP    AG   ++++ESWR
Sbjct: 41  SSGRHRTDGTNNPPHEEAAGKVPASSEESWR 71


>09_04_0355 + 16922863-16924224
          Length = 453

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = -2

Query: 235 PAVAAGGGRVSRDV 194
           PAVAAGGGR++R V
Sbjct: 369 PAVAAGGGRMARQV 382


>07_03_1779 -
           29458889-29459249,29461107-29461283,29461374-29461573,
           29461673-29462752
          Length = 605

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 168 EAWSG--GRVSTSLDTRPPPAATAGSCESATDESWRV 272
           EAW G  G V  +++T+P    T+G  +  TD  WR+
Sbjct: 488 EAWGGSAGAVKCAMETQPIVNRTSGGLDIGTD--WRL 522


>07_03_1071 + 23753883-23754752
          Length = 289

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 112 QKVQRRKMAAPPNLR*GVWKRGAAGVCRRLSTRGH 216
           +K   +KMA  P L     KRG++GV   +S R H
Sbjct: 249 KKASDKKMAVTPLLGPSHGKRGSSGVHELISPRSH 283


>04_04_0677 +
           27195264-27195291,27196034-27196271,27196350-27196500,
           27196578-27196972,27197270-27197339,27197414-27197696,
           27197972-27198297,27198409-27199368
          Length = 816

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 162 GVEAWSGGRVSTSLDTRPPPAATAGSCES 248
           G++  +   +STS   +PPPA+  G+C++
Sbjct: 197 GIDPSNPSFLSTSDQAKPPPASFKGTCQT 225


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,821,145
Number of Sequences: 37544
Number of extensions: 197888
Number of successful extensions: 872
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)