Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_F03
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   165   5e-42
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   165   5e-42
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    42   5e-05
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    25   5.9  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    25   5.9  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    25   5.9  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  165 bits (400), Expect = 5e-42
 Identities = 74/114 (64%), Positives = 96/114 (84%)
 Frame = +1

Query: 226 FGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTV 405
           FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+GVDIRV V
Sbjct: 7   FGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRV 66

Query: 406 KGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIQDILVQYDRSLLVADPRR 567
            GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK E++  L+ YDR+LLVADPRR
Sbjct: 67  SGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRR 120


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  165 bits (400), Expect = 5e-42
 Identities = 74/114 (64%), Positives = 96/114 (84%)
 Frame = +1

Query: 226 FGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTV 405
           FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+GVDIRV V
Sbjct: 7   FGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRV 66

Query: 406 KGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIQDILVQYDRSLLVADPRR 567
            GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK E++  L+ YDR+LLVADPRR
Sbjct: 67  SGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRR 120


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 42.3 bits (95), Expect = 5e-05
 Identities = 26/80 (32%), Positives = 39/80 (48%)
 Frame = +1

Query: 229 GRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVK 408
           G++K++ A      G G   VNG P D+   R++  K      L    + +  ++  TV 
Sbjct: 12  GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVH 70

Query: 409 GGGHVAQVYAIRQAISKALI 468
           GGG   Q  A+  AISK+LI
Sbjct: 71  GGGPTGQSGAVHAAISKSLI 90


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 217 CRHEELVMQLDQKVSDQQVLLEKAGVPGFFVTNK 116
           CR+ + +M  D+KVS Q  LL  A +   F  N+
Sbjct: 277 CRYFDHIMHSDEKVSYQYALLNLAMLQADFGCNE 310


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -2

Query: 235 YGRKPSCRHEELV-MQLDQKV-SDQQVLLEKAGVPGF 131
           +G+     HE+L+  + D+K  +D Q+L+  AG P F
Sbjct: 717 FGKPTKKFHEQLLEFETDEKERADLQILISPAGAPDF 753


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 431 TCATCPPPFTVTLISTP 381
           T  +CPPP T+ +++ P
Sbjct: 184 TSTSCPPPTTILIVTVP 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,421,362
Number of Sequences: 5004
Number of extensions: 50801
Number of successful extensions: 133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)