Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_F03
(569 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 168 2e-42
11_01_0155 - 1287003-1287452 168 2e-42
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 38 0.007
03_06_0097 - 31632238-31632525,31633386-31633769 36 0.023
12_01_0196 + 1451166-1451443,1453035-1453478,1453569-1454145 30 1.5
08_01_0379 + 3371125-3371988 29 2.0
02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303 29 2.0
02_04_0317 + 21996324-21996681,21996833-21996859,21997299-219982... 29 3.4
11_01_0523 - 4109070-4109984,4110532-4110936 28 6.0
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986... 28 6.0
01_03_0132 - 12867353-12867377,12867925-12868430 27 8.0
>12_01_0152 - 1168928-1169377
Length = 149
Score = 168 bits (409), Expect = 2e-42
Identities = 75/122 (61%), Positives = 100/122 (81%), Gaps = 1/122 (0%)
Frame = +1
Query: 205 PRAGT-RVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFS 381
P GT + FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 8 PPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFK 67
Query: 382 GVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIQDILVQYDRSLLVADP 561
+D+R+ V+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE++DI +YDR+LLVADP
Sbjct: 68 DIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADP 127
Query: 562 RR 567
RR
Sbjct: 128 RR 129
>11_01_0155 - 1287003-1287452
Length = 149
Score = 168 bits (409), Expect = 2e-42
Identities = 75/122 (61%), Positives = 100/122 (81%), Gaps = 1/122 (0%)
Frame = +1
Query: 205 PRAGT-RVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFS 381
P GT + FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 8 PPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFK 67
Query: 382 GVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIQDILVQYDRSLLVADP 561
+D+R+ V+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE++DI +YDR+LLVADP
Sbjct: 68 DIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADP 127
Query: 562 RR 567
RR
Sbjct: 128 RR 129
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 37.5 bits (83), Expect = 0.007
Identities = 26/79 (32%), Positives = 38/79 (48%)
Frame = +1
Query: 229 GRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVK 408
G++K + A + + G G VN + D P +L ++ + D+ TVK
Sbjct: 295 GKRKCSIARVWIQPGDGKFIVNDKQFDSYFP-ILDHRADLLRPFTVTKTLGRWDVTCTVK 353
Query: 409 GGGHVAQVYAIRQAISKAL 465
GGG QV AIR IS+AL
Sbjct: 354 GGGVSGQVGAIRLGISRAL 372
>03_06_0097 - 31632238-31632525,31633386-31633769
Length = 223
Score = 35.9 bits (79), Expect = 0.023
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = +1
Query: 229 GRKKTATAVAYCKRGHGVLRVNGRPLDLV---EPRLLQYKLQEPILLLGKEKFSGVDIRV 399
GR+KTA A + G G + +N R P ++Y + P++ LG E + D+ V
Sbjct: 102 GRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEY-CKVPLVTLGFE--NSYDVFV 158
Query: 400 TVKGGGHVAQVYAIRQAISKALI 468
V GGG Q AI +++AL+
Sbjct: 159 KVHGGGLSGQAQAICLGVARALV 181
>12_01_0196 + 1451166-1451443,1453035-1453478,1453569-1454145
Length = 432
Score = 29.9 bits (64), Expect = 1.5
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Frame = -2
Query: 292 LHATLHVLVCSMLPQLQFSYGRKP---SCRHEELVMQ------LDQKVSDQQVLLEKAGV 140
LH L + V M+P +FS+ R+P EL+++ + K S Q VLL ++
Sbjct: 324 LHELLSLTVEKMIPLERFSHFRRPFDMEVNLRELILKHPGIFYISTKGSTQTVLLRESYS 383
Query: 139 PGFFVTNKPIEVKVQMYLLDFIL 71
G V P+ V+ +LD IL
Sbjct: 384 KGCLVDPNPV-YNVRRKMLDLIL 405
>08_01_0379 + 3371125-3371988
Length = 287
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +1
Query: 181 FDQVASLIPRAGTRVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEP 321
F A+ +P A +FGR +TA V+Y GHG LD V P
Sbjct: 177 FASAATAMPAAAWPLFGRVQTAAPVSY-GGGHGSAAAATMFLDTVAP 222
>02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303
Length = 462
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 246 NCGSILQTRTWSVACKWTPPRPGRTQTSS 332
+C S +Q R+ SV W PP G+T+T S
Sbjct: 275 DCVSAMQQRSSSVRLIWGPPGTGKTKTIS 303
>02_04_0317 +
21996324-21996681,21996833-21996859,21997299-21998227,
21998317-21999162
Length = 719
Score = 28.7 bits (61), Expect = 3.4
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = -2
Query: 259 MLPQLQFSYGRKPS--CRHEELVMQLDQKVSDQQVLLEKAGVPGFFVTNKPIEVKVQMYL 86
+LP + + G P+ C +ELV + D+ LL +A PG+ +K + + L
Sbjct: 192 LLPPKRIAPGELPARRCPSDELVFE-DESERGSNALLARAWSPGWQNADKALAAFLNGPL 250
Query: 85 LDFILRLSKMD 53
+D+ + K D
Sbjct: 251 MDYSVNRKKAD 261
>11_01_0523 - 4109070-4109984,4110532-4110936
Length = 439
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 409 GGGHVAQVYAIRQAISKALIAFY 477
GGG V +++A++KAL+AFY
Sbjct: 48 GGGGFFDVGRLKEALAKALVAFY 70
>04_04_1154 -
31297628-31298020,31298150-31298300,31298389-31298620,
31298700-31298910,31299137-31299255,31299341-31299415,
31299991-31300189,31300258-31300664,31300775-31300839,
31300967-31301011,31301449-31301520,31301597-31301671,
31301912-31301983,31302178-31302249,31302525-31302596,
31302880-31302951,31303056-31303127,31304064-31304135,
31304375-31304561,31304686-31304815
Length = 930
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 292 NGRPLDLVEPRLLQYKLQEPILLL 363
NG PLD V+P+L ++ +E I ++
Sbjct: 807 NGHPLDFVDPKLSEFNSEEVIRVI 830
>01_03_0132 - 12867353-12867377,12867925-12868430
Length = 176
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +1
Query: 193 ASLIPRAGTRVFGRKKTATAVA---YCKRGHGVL 285
A ++P A GR++ A A A +C+RG GV+
Sbjct: 24 AMVVPAAAAPECGRREAAAAAAAAVFCRRGRGVV 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,534,265
Number of Sequences: 37544
Number of extensions: 330353
Number of successful extensions: 784
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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