Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_F03
(569 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical pr... 180 6e-46
Z93372-4|CAB07546.1| 301|Caenorhabditis elegans Hypothetical pr... 30 1.0
Z67995-5|CAA91945.2| 176|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z11115-14|CAC42391.1| 644|Caenorhabditis elegans Hypothetical p... 29 3.1
Z11115-13|CAA77454.2| 642|Caenorhabditis elegans Hypothetical p... 29 3.1
AF269694-1|AAF76193.1| 642|Caenorhabditis elegans LIN-9S protein. 29 3.1
AF269693-1|AAF76192.1| 644|Caenorhabditis elegans LIN-9L protein. 29 3.1
Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical pr... 27 9.5
>Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical
protein T01C3.6 protein.
Length = 144
Score = 180 bits (438), Expect = 6e-46
Identities = 77/116 (66%), Positives = 103/116 (88%)
Frame = +1
Query: 220 RVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRV 399
+ FGRKKTATAVA+CK+G G+++VNGRPL+ +EP++L+ KLQEP+LL+GKE+F VDIR+
Sbjct: 9 QTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDVDIRI 68
Query: 400 TVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIQDILVQYDRSLLVADPRR 567
V GGGHVAQ+YA+RQA++KAL+A+Y KYVDE SK+E+++I YD+SLLVADPRR
Sbjct: 69 RVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRR 124
>Z93372-4|CAB07546.1| 301|Caenorhabditis elegans Hypothetical
protein BE10.4 protein.
Length = 301
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 484 YVDEASKKEIQDILVQYDRSLLVADPRR 567
+ DE +KE+ D+ QYDRS+ + D R
Sbjct: 151 FCDEVQQKEVGDLFHQYDRSIEIIDKVR 178
>Z67995-5|CAA91945.2| 176|Caenorhabditis elegans Hypothetical
protein M153.3 protein.
Length = 176
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 297 SIYTQHSMSSFAVCYRSCSFLTAENPRAGTR 205
S+ QHS+ +F VC ++C F + N A R
Sbjct: 130 SLTCQHSVFAFRVCRKTCGFCASVNKTATVR 160
>Z11115-14|CAC42391.1| 644|Caenorhabditis elegans Hypothetical
protein ZK637.7b protein.
Length = 644
Score = 28.7 bits (61), Expect = 3.1
Identities = 28/93 (30%), Positives = 47/93 (50%)
Frame = +1
Query: 253 VAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVKGGGHVAQV 432
V +C +G V V+ L L++ L LQ + +G +K S VD++ G +++
Sbjct: 552 VEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVDLQSL---GDAISE- 602
Query: 433 YAIRQAISKALIAFYQKYVDEASKKEIQDILVQ 531
IR AI +AF+Q YV E K+ I+++
Sbjct: 603 --IRTAIHPRNVAFFQDYV-EVHMKQFHTIMLE 632
>Z11115-13|CAA77454.2| 642|Caenorhabditis elegans Hypothetical
protein ZK637.7a protein.
Length = 642
Score = 28.7 bits (61), Expect = 3.1
Identities = 28/93 (30%), Positives = 47/93 (50%)
Frame = +1
Query: 253 VAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVKGGGHVAQV 432
V +C +G V V+ L L++ L LQ + +G +K S VD++ G +++
Sbjct: 550 VEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVDLQSL---GDAISE- 600
Query: 433 YAIRQAISKALIAFYQKYVDEASKKEIQDILVQ 531
IR AI +AF+Q YV E K+ I+++
Sbjct: 601 --IRTAIHPRNVAFFQDYV-EVHMKQFHTIMLE 630
>AF269694-1|AAF76193.1| 642|Caenorhabditis elegans LIN-9S protein.
Length = 642
Score = 28.7 bits (61), Expect = 3.1
Identities = 28/93 (30%), Positives = 47/93 (50%)
Frame = +1
Query: 253 VAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVKGGGHVAQV 432
V +C +G V V+ L L++ L LQ + +G +K S VD++ G +++
Sbjct: 550 VEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVDLQSL---GDAISE- 600
Query: 433 YAIRQAISKALIAFYQKYVDEASKKEIQDILVQ 531
IR AI +AF+Q YV E K+ I+++
Sbjct: 601 --IRTAIHPRNVAFFQDYV-EVHMKQFHTIMLE 630
>AF269693-1|AAF76192.1| 644|Caenorhabditis elegans LIN-9L protein.
Length = 644
Score = 28.7 bits (61), Expect = 3.1
Identities = 28/93 (30%), Positives = 47/93 (50%)
Frame = +1
Query: 253 VAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVKGGGHVAQV 432
V +C +G V V+ L L++ L LQ + +G +K S VD++ G +++
Sbjct: 552 VEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVDLQSL---GDAISE- 602
Query: 433 YAIRQAISKALIAFYQKYVDEASKKEIQDILVQ 531
IR AI +AF+Q YV E K+ I+++
Sbjct: 603 --IRTAIHPRNVAFFQDYV-EVHMKQFHTIMLE 632
>Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical
protein T21B6.3 protein.
Length = 821
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 201 NSSCRHEG-FRP*ENCNCGSILQTRTWSVACKWTP 302
+SSC +G R + CN S W+ C+W+P
Sbjct: 739 DSSCHCDGPDREEKECNSQSCAPQCAWNTWCEWSP 773
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,530,825
Number of Sequences: 27780
Number of extensions: 294136
Number of successful extensions: 630
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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