Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_F02
(448 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q7Q194 Cluster: ENSANGP00000013201; n=2; Culicidae|Rep:... 104 8e-22
UniRef50_UPI0000D571F8 Cluster: PREDICTED: similar to CG7042-PA;... 95 6e-19
UniRef50_UPI00015B44A3 Cluster: PREDICTED: similar to CG34140-PA... 80 2e-14
UniRef50_Q6GQ53 Cluster: Pseudouridylate synthase; n=4; Euteleos... 73 4e-12
UniRef50_Q28LN3 Cluster: Pseudouridylate synthase; n=15; Alphapr... 70 3e-11
UniRef50_Q8N0Z8 Cluster: tRNA pseudouridine synthase-like 1; n=1... 67 1e-10
UniRef50_UPI0000DB6E84 Cluster: PREDICTED: similar to CG7042-PA;... 66 2e-10
UniRef50_UPI0000E482DE Cluster: PREDICTED: similar to MGC80334 p... 65 8e-10
UniRef50_Q3UAA3 Cluster: Pseudouridylate synthase; n=8; Eutheria... 64 1e-09
UniRef50_Q29EU3 Cluster: GA20054-PA; n=2; Diptera|Rep: GA20054-P... 62 5e-09
UniRef50_Q5LNR0 Cluster: tRNA pseudouridine synthase A; n=45; Al... 59 5e-08
UniRef50_Q00Z96 Cluster: Pseudouridylate synthase; n=2; Ostreoco... 58 7e-08
UniRef50_Q9ZCA3 Cluster: tRNA pseudouridine synthase A; n=13; Ri... 58 7e-08
UniRef50_Q54RR6 Cluster: Pseudouridylate synthase; n=1; Dictyost... 55 8e-07
UniRef50_Q4RDQ2 Cluster: Chromosome undetermined SCAF16007, whol... 54 1e-06
UniRef50_A2TUS1 Cluster: Pseudouridylate synthase; n=2; Flavobac... 54 2e-06
UniRef50_A6DAN4 Cluster: Pseudouridylate synthase; n=1; Caminiba... 53 2e-06
UniRef50_Q30RV9 Cluster: Pseudouridylate synthase; n=1; Thiomicr... 52 6e-06
UniRef50_Q5FPX3 Cluster: tRNA pseudouridine synthase A; n=4; Rho... 51 1e-05
UniRef50_Q1YHJ2 Cluster: Pseudouridylate synthase; n=2; Alphapro... 50 3e-05
UniRef50_A0RNY9 Cluster: Pseudouridylate synthase; n=2; Campylob... 50 3e-05
UniRef50_Q4FNF9 Cluster: Pseudouridylate synthase; n=6; Bacteria... 49 4e-05
UniRef50_A6Q408 Cluster: Pseudouridylate synthase; n=2; unclassi... 49 4e-05
UniRef50_O84469 Cluster: tRNA pseudouridine synthase A; n=7; Chl... 49 4e-05
UniRef50_Q64XV0 Cluster: tRNA pseudouridine synthase A; n=16; Ba... 48 7e-05
UniRef50_P47428 Cluster: tRNA pseudouridine synthase A; n=3; Myc... 48 9e-05
UniRef50_A7AKE9 Cluster: Putative uncharacterized protein; n=2; ... 48 1e-04
UniRef50_Q83G11 Cluster: tRNA pseudouridine synthase A; n=3; Tro... 48 1e-04
UniRef50_Q7U335 Cluster: tRNA pseudouridine synthase A; n=7; Gam... 48 1e-04
UniRef50_A6DH96 Cluster: Pseudouridylate synthase; n=1; Lentisph... 47 2e-04
UniRef50_A0L9F6 Cluster: Pseudouridylate synthase; n=1; Magnetoc... 47 2e-04
UniRef50_Q47LM3 Cluster: Pseudouridylate synthase; n=2; Actinomy... 46 3e-04
UniRef50_Q1MM77 Cluster: Pseudouridylate synthase; n=13; Alphapr... 46 3e-04
UniRef50_A4XKB7 Cluster: Pseudouridylate synthase; n=3; Clostrid... 46 3e-04
UniRef50_Q9PPV4 Cluster: tRNA pseudouridine synthase A; n=1; Ure... 46 4e-04
UniRef50_Q72I65 Cluster: tRNA pseudouridine synthase A; n=3; The... 46 4e-04
UniRef50_UPI000050FF8C Cluster: COG0101: Pseudouridylate synthas... 46 5e-04
UniRef50_Q11XU3 Cluster: Pseudouridylate synthase; n=1; Cytophag... 46 5e-04
UniRef50_A1AXN3 Cluster: Pseudouridylate synthase; n=3; Bacteria... 46 5e-04
UniRef50_Q9PP96 Cluster: tRNA pseudouridine synthase A; n=13; Ca... 45 7e-04
UniRef50_A7I1Z3 Cluster: tRNA pseudouridine synthase A; n=1; Cam... 45 9e-04
UniRef50_Q9KTA4 Cluster: tRNA pseudouridine synthase A; n=29; Ga... 45 9e-04
UniRef50_Q820P8 Cluster: tRNA pseudouridine synthase A; n=10; Pr... 45 9e-04
UniRef50_Q1FEL6 Cluster: Pseudouridylate synthase; n=1; Clostrid... 44 0.001
UniRef50_A7DDE8 Cluster: tRNA pseudouridine synthase A; n=3; Rhi... 44 0.001
UniRef50_Q5PAN6 Cluster: tRNA pseudouridine synthase A; n=12; Al... 44 0.001
UniRef50_Q8XXX8 Cluster: tRNA pseudouridine synthase A; n=50; Be... 44 0.002
UniRef50_Q72DL8 Cluster: tRNA pseudouridine synthase A; n=2; Des... 44 0.002
UniRef50_Q6NKP7 Cluster: Pseudouridylate synthase; n=8; Magnolio... 43 0.003
UniRef50_Q8DWH1 Cluster: tRNA pseudouridine synthase A; n=42; La... 43 0.003
UniRef50_Q6G7A2 Cluster: tRNA pseudouridine synthase A; n=16; St... 43 0.003
UniRef50_P70830 Cluster: tRNA pseudouridine synthase A; n=3; Bor... 43 0.003
UniRef50_A6C4N8 Cluster: Pseudouridylate synthase; n=1; Planctom... 43 0.003
UniRef50_Q6AD25 Cluster: tRNA pseudouridine synthase A; n=4; Act... 43 0.003
UniRef50_P60349 Cluster: tRNA pseudouridine synthase A; n=13; Ac... 43 0.003
UniRef50_Q3A9U9 Cluster: Pseudouridylate synthase; n=1; Carboxyd... 42 0.005
UniRef50_Q057U4 Cluster: Pseudouridylate synthase; n=1; Buchnera... 42 0.005
UniRef50_A7C1F2 Cluster: tRNA pseudouridine synthase A; n=1; Beg... 42 0.005
UniRef50_Q5L3Q7 Cluster: tRNA pseudouridine synthase A; n=11; Ba... 42 0.005
UniRef50_UPI0000E87E98 Cluster: tRNA pseudouridine synthase A; n... 42 0.006
UniRef50_Q21IY8 Cluster: Pseudouridylate synthase; n=2; Gammapro... 42 0.006
UniRef50_A2ZIV2 Cluster: Pseudouridylate synthase; n=2; Oryza sa... 42 0.008
UniRef50_Q6I3T8 Cluster: tRNA pseudouridine synthase A 2; n=12; ... 42 0.008
UniRef50_A6EFU7 Cluster: Pseudouridylate synthase; n=1; Pedobact... 41 0.011
UniRef50_Q89ZY4 Cluster: tRNA pseudouridine synthase A; n=3; Bac... 41 0.011
UniRef50_O66953 Cluster: tRNA pseudouridine synthase A; n=1; Aqu... 41 0.011
UniRef50_Q3Y386 Cluster: Pseudouridylate synthase; n=3; Firmicut... 41 0.014
UniRef50_Q00RV7 Cluster: TRUA1_PARUW tRNA pseudouridine synthase... 41 0.014
UniRef50_A1A6J3 Cluster: Pseudouridylate synthase; n=9; Magnolio... 41 0.014
UniRef50_Q74L59 Cluster: tRNA pseudouridine synthase A; n=18; Ba... 41 0.014
UniRef50_Q5NG36 Cluster: tRNA pseudouridine synthase A; n=11; Fr... 41 0.014
UniRef50_Q2S4S9 Cluster: Pseudouridylate synthase; n=1; Saliniba... 40 0.019
UniRef50_O83802 Cluster: tRNA pseudouridine synthase A; n=1; Tre... 40 0.019
UniRef50_Q6MQH6 Cluster: tRNA pseudouridine synthase A; n=1; Bde... 40 0.019
UniRef50_Q2LUS6 Cluster: Pseudouridylate synthase; n=1; Syntroph... 40 0.025
UniRef50_Q8CY46 Cluster: tRNA pseudouridine synthase A; n=3; Bif... 40 0.025
UniRef50_Q1N6P3 Cluster: Pseudouridylate synthase; n=2; Gammapro... 40 0.032
UniRef50_Q8D2P5 Cluster: tRNA pseudouridine synthase A; n=1; Wig... 40 0.032
UniRef50_Q8R7Y7 Cluster: tRNA pseudouridine synthase A; n=9; Clo... 39 0.043
UniRef50_Q6MEE7 Cluster: tRNA pseudouridine synthase A 1; n=1; C... 39 0.043
UniRef50_Q1AU61 Cluster: Pseudouridylate synthase; n=1; Rubrobac... 39 0.057
UniRef50_A4BHD0 Cluster: Pseudouridylate synthase; n=1; Reinekea... 39 0.057
UniRef50_Q88XU9 Cluster: tRNA pseudouridine synthase A; n=10; La... 38 0.075
UniRef50_Q47HQ7 Cluster: Pseudouridylate synthase; n=1; Dechloro... 38 0.099
UniRef50_A5VF15 Cluster: Glycosyl transferase, family 2; n=1; Sp... 38 0.099
UniRef50_Q73KE3 Cluster: tRNA pseudouridine synthase A; n=1; Tre... 38 0.099
UniRef50_Q7NAQ9 Cluster: tRNA pseudouridine synthase A; n=1; Myc... 38 0.13
UniRef50_Q6ANM1 Cluster: tRNA pseudouridine synthase A 1; n=1; D... 38 0.13
UniRef50_A5D5F5 Cluster: Pseudouridylate synthase; n=2; Clostrid... 37 0.17
UniRef50_A1HQP5 Cluster: Pseudouridylate synthase; n=1; Thermosi... 36 0.30
UniRef50_Q4Q7E9 Cluster: Pseudouridylate synthase; n=5; Trypanos... 36 0.30
UniRef50_Q8XLQ0 Cluster: tRNA pseudouridine synthase A 1; n=4; C... 36 0.30
UniRef50_Q4EAG2 Cluster: TRNA pseudouridine synthase A; n=1; Wol... 36 0.40
UniRef50_Q4AHD2 Cluster: TRNA pseudouridine synthase; n=1; Chlor... 36 0.40
UniRef50_A4CM73 Cluster: Pseudouridylate synthase; n=1; Robigini... 36 0.40
UniRef50_P60351 Cluster: tRNA pseudouridine synthase A; n=2; Can... 36 0.40
UniRef50_Q6I4Q2 Cluster: tRNA pseudouridine synthase A 1; n=14; ... 36 0.40
UniRef50_A6TWE8 Cluster: Pseudouridylate synthase; n=4; Clostrid... 36 0.53
UniRef50_A5USG0 Cluster: Pseudouridylate synthase; n=3; Chlorofl... 36 0.53
UniRef50_Q4ALX6 Cluster: Pseudouridylate synthase; n=1; Chlorobi... 35 0.70
UniRef50_A6NVS7 Cluster: Pseudouridylate synthase; n=1; Bacteroi... 35 0.70
UniRef50_A5WGT0 Cluster: Pseudouridylate synthase; n=4; Moraxell... 35 0.70
UniRef50_A5KIY9 Cluster: Putative uncharacterized protein; n=1; ... 35 0.70
UniRef50_Q7TU31 Cluster: tRNA pseudouridine synthase A; n=5; Pro... 35 0.70
UniRef50_Q8R601 Cluster: tRNA pseudouridine synthase A; n=3; Fus... 35 0.70
UniRef50_Q0LPW8 Cluster: Pseudouridylate synthase; n=1; Herpetos... 35 0.92
UniRef50_A0YB03 Cluster: Pseudouridylate synthase; n=10; Gammapr... 35 0.92
UniRef50_Q890R5 Cluster: tRNA pseudouridine synthase A 2; n=11; ... 35 0.92
UniRef50_A6EHK7 Cluster: Pseudouridylate synthase; n=1; Pedobact... 34 1.2
UniRef50_A3ZQX0 Cluster: Pseudouridylate synthase; n=2; Bacteria... 34 1.2
UniRef50_Q8SQS9 Cluster: TRNA PSEUDOURIDINE SYNTHASE A; n=1; Enc... 34 1.2
UniRef50_Q8CWM6 Cluster: tRNA pseudouridine synthase A; n=1; Syn... 34 1.2
UniRef50_Q1IRQ4 Cluster: Pseudouridylate synthase; n=2; Acidobac... 34 1.6
UniRef50_Q0AUL4 Cluster: Pseudouridylate synthase; n=1; Syntroph... 34 1.6
UniRef50_A6BIC3 Cluster: Pseudouridylate synthase; n=1; Dorea lo... 34 1.6
UniRef50_A5N006 Cluster: Predicted transporter protein; n=1; Clo... 34 1.6
UniRef50_A1WAT5 Cluster: Pseudouridylate synthase; n=5; Comamona... 34 1.6
UniRef50_Q583N7 Cluster: Pseudouridylate synthase; n=1; Trypanos... 34 1.6
UniRef50_Q22RB7 Cluster: Putative uncharacterized protein; n=1; ... 34 1.6
UniRef50_Q9RS37 Cluster: tRNA pseudouridine synthase A; n=2; Dei... 34 1.6
UniRef50_O22928 Cluster: Putative tRNA pseudouridine synthase; n... 34 1.6
UniRef50_UPI00015BE519 Cluster: UPI00015BE519 related cluster; n... 33 2.1
UniRef50_Q30RR7 Cluster: Diguanylate cyclase (GGDEF domain) with... 33 2.1
UniRef50_Q8I260 Cluster: Putative uncharacterized protein PFA040... 33 2.1
UniRef50_Q7MBB9 Cluster: tRNA pseudouridine synthase A; n=1; Glo... 33 2.1
UniRef50_Q30XU3 Cluster: Pseudouridylate synthase; n=2; Desulfov... 33 2.8
UniRef50_Q2RSF6 Cluster: Putative uncharacterized protein; n=1; ... 33 2.8
UniRef50_A3EP68 Cluster: Pseudouridylate synthase; n=1; Leptospi... 33 2.8
UniRef50_Q7YYE5 Cluster: Rhoptry protein, possible; n=1; Cryptos... 33 2.8
UniRef50_Q7RL67 Cluster: Histone acetyltransferase GCN5-related;... 33 2.8
UniRef50_Q5CNB8 Cluster: Rhoptry protein; n=2; Cryptosporidium|R... 33 2.8
UniRef50_A0DFY8 Cluster: Pseudouridylate synthase; n=1; Parameci... 33 2.8
UniRef50_Q8SQI1 Cluster: Probable DNA-3-methyladenine glycosylas... 33 2.8
UniRef50_Q3ZZP4 Cluster: Pseudouridylate synthase; n=3; Dehaloco... 33 3.7
UniRef50_Q2JUJ7 Cluster: Pseudouridylate synthase; n=2; Synechoc... 33 3.7
UniRef50_A5CET3 Cluster: Pseudouridylate synthase; n=1; Orientia... 33 3.7
UniRef50_A0ZG49 Cluster: Pseudouridylate synthase; n=3; Cyanobac... 33 3.7
UniRef50_Q8TU65 Cluster: tRNA pseudouridine synthase A; n=5; Arc... 33 3.7
UniRef50_A7HCM5 Cluster: tRNA-pseudouridine synthase I; n=2; Ana... 32 4.9
UniRef50_A6KZ34 Cluster: Putative outer membrane protein, probab... 32 4.9
UniRef50_A5I338 Cluster: Pseudouridylate synthase; n=7; Clostrid... 32 4.9
UniRef50_Q2FT01 Cluster: Pseudouridylate synthase; n=1; Methanos... 32 4.9
UniRef50_Q8CXQ1 Cluster: tRNA pseudouridine synthase A; n=1; Myc... 32 4.9
UniRef50_P56144 Cluster: tRNA pseudouridine synthase A; n=4; Hel... 32 4.9
UniRef50_A3JGC0 Cluster: Pseudouridylate synthase; n=4; Alteromo... 32 6.5
UniRef50_A0J1Y0 Cluster: Multi-sensor hybrid histidine kinase pr... 32 6.5
UniRef50_Q0II44 Cluster: Similar to solute carrier family 25 mem... 32 6.5
UniRef50_Q9VK59 Cluster: CG5787-PA; n=1; Drosophila melanogaster... 32 6.5
UniRef50_A2G9N1 Cluster: Putative uncharacterized protein; n=2; ... 32 6.5
UniRef50_Q5V192 Cluster: Putative uncharacterized protein; n=1; ... 32 6.5
UniRef50_UPI0000EBDF94 Cluster: PREDICTED: hypothetical protein;... 31 8.6
UniRef50_Q8DI79 Cluster: Tll1711 protein; n=3; Cyanobacteria|Rep... 31 8.6
UniRef50_Q8GB97 Cluster: Pseudouridylate synthase; n=2; Clostrid... 31 8.6
UniRef50_Q23MI2 Cluster: Putative uncharacterized protein; n=1; ... 31 8.6
UniRef50_Q7TTT1 Cluster: tRNA pseudouridine synthase A; n=26; Cy... 31 8.6
>UniRef50_Q7Q194 Cluster: ENSANGP00000013201; n=2; Culicidae|Rep:
ENSANGP00000013201 - Anopheles gambiae str. PEST
Length = 490
Score = 104 bits (250), Expect = 8e-22
Identities = 50/109 (45%), Positives = 73/109 (66%)
Frame = +3
Query: 120 KDGRDYPDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIY 299
K + DP +VQG++E ALLKLR +N P + LSSRTD GVHAL+++ H DL++ + Y
Sbjct: 24 KSAGQFKDPHTVQGVIEEALLKLRPVNEPLLKLSSRTDTGVHALHNTVHVDLQRPNGKPY 83
Query: 300 DADNITYQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYRFAV 446
D+D IT +N+++ + +S+ + +RV F+AR A RTYLYR AV
Sbjct: 84 DSDRITKTLNRAFEKDGQSLRILSTVRVPASFHARLCAKSRTYLYRLAV 132
>UniRef50_UPI0000D571F8 Cluster: PREDICTED: similar to CG7042-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG7042-PA - Tribolium castaneum
Length = 484
Score = 95.1 bits (226), Expect = 6e-19
Identities = 49/102 (48%), Positives = 62/102 (60%)
Frame = +3
Query: 141 DPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITY 320
DP +VQG +E+AL +L N P V LSSRTD GVHALNS+ H DL + Y+ IT
Sbjct: 33 DPSTVQGQLEMALKRLNPTNDPVVYLSSRTDSGVHALNSTCHVDLYRSNELEYEPKTITI 92
Query: 321 QMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYRFAV 446
+N+ + N + V K V DF+ R TAI RTYLYR A+
Sbjct: 93 CLNRYFDKNEVPIRVIKTYWVPPDFHCRHTAISRTYLYRIAI 134
>UniRef50_UPI00015B44A3 Cluster: PREDICTED: similar to CG34140-PA;
n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
CG34140-PA - Nasonia vitripennis
Length = 298
Score = 80.2 bits (189), Expect = 2e-14
Identities = 39/102 (38%), Positives = 61/102 (59%)
Frame = +3
Query: 141 DPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITY 320
D +++QG +E ++ + N P + L+ RTD GVHAL +SAH DLE GT D + +
Sbjct: 32 DIDTIQGAIEYSMRRFNFSNIPTISLAGRTDAGVHALCTSAHVDLEHSGT--LDTEYLVR 89
Query: 321 QMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYRFAV 446
MN++ + N + + V+ DF+AR++A RTYLYR +
Sbjct: 90 MMNRNLINANHEIRIMSAHEVSKDFHARYSAKSRTYLYRLII 131
>UniRef50_Q6GQ53 Cluster: Pseudouridylate synthase; n=4;
Euteleostomi|Rep: Pseudouridylate synthase - Xenopus
laevis (African clawed frog)
Length = 298
Score = 72.5 bits (170), Expect = 4e-12
Identities = 40/98 (40%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Frame = +3
Query: 153 VQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEK-YGTEIYDADNITYQMN 329
VQ +E+A KLR + K +SSRTD GVHA+ + AH D+E+ G + + + MN
Sbjct: 34 VQNYLEVAAQKLRPVGTIKFFISSRTDSGVHAICNLAHVDIERAKGKPPFTEEILVQAMN 93
Query: 330 KSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYRFA 443
+H + + + K IRV D+F+AR A+ RTY+YR A
Sbjct: 94 --HHLQPEPIRLLKAIRVCDNFHARHNALSRTYVYRVA 129
>UniRef50_Q28LN3 Cluster: Pseudouridylate synthase; n=15;
Alphaproteobacteria|Rep: Pseudouridylate synthase -
Jannaschia sp. (strain CCS1)
Length = 261
Score = 69.7 bits (163), Expect = 3e-11
Identities = 40/99 (40%), Positives = 56/99 (56%)
Frame = +3
Query: 141 DPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITY 320
D SVQG +E AL KL + + P + + RTD GVHAL AH D+++ +D +
Sbjct: 23 DLPSVQGAVEAALAKLEA-DVPTIAAAGRTDTGVHALGQVAHADMQRD----WDPFRLAE 77
Query: 321 QMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYR 437
+N YH V + C R +DDF+ARF+A R+Y YR
Sbjct: 78 ALN--YHLKPAPVAITACARAHDDFHARFSATWRSYTYR 114
>UniRef50_Q8N0Z8 Cluster: tRNA pseudouridine synthase-like 1; n=11;
Eutheria|Rep: tRNA pseudouridine synthase-like 1 - Homo
sapiens (Human)
Length = 303
Score = 67.3 bits (157), Expect = 1e-10
Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Frame = +3
Query: 153 VQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLE-KYGTEIYDADNITYQMN 329
VQ +E A +L S+ + +SSRTD GVHAL+++AH D++ + G + + + +N
Sbjct: 40 VQNYLEEAAERLNSVEPVRFTISSRTDAGVHALSNAAHLDVQRRSGRPPFPPEVLAEALN 99
Query: 330 KSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYRFA 443
H + ++ V + RV DF+AR A RTYLYR A
Sbjct: 100 T--HLRHPAIRVLRAFRVPSDFHARHAATSRTYLYRLA 135
>UniRef50_UPI0000DB6E84 Cluster: PREDICTED: similar to CG7042-PA;
n=1; Apis mellifera|Rep: PREDICTED: similar to CG7042-PA
- Apis mellifera
Length = 484
Score = 66.5 bits (155), Expect = 2e-10
Identities = 37/105 (35%), Positives = 62/105 (59%), Gaps = 3/105 (2%)
Frame = +3
Query: 141 DPESVQGLMEIALLKL--RSLNYPKVVLSSRTDGGVHALNSSAHFDLE-KYGTEIYDADN 311
D +++QG +E A L + + +PK+ SSRTD GVH++ + AH D++ KY + Y D
Sbjct: 14 DIDTIQGALETAFTTLIPKCIEWPKITCSSRTDIGVHSMCNLAHIDIKNKYDSIYYPNDT 73
Query: 312 ITYQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYRFAV 446
+ Y +N+ + + ++ + + I V F+ R RTYLYRF+V
Sbjct: 74 LKY-VNRYFFDCHHNIRLLEFIPVKKTFHVRKFIHSRTYLYRFSV 117
>UniRef50_UPI0000E482DE Cluster: PREDICTED: similar to MGC80334
protein; n=1; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to MGC80334 protein -
Strongylocentrotus purpuratus
Length = 306
Score = 64.9 bits (151), Expect = 8e-10
Identities = 42/103 (40%), Positives = 65/103 (63%), Gaps = 5/103 (4%)
Frame = +3
Query: 153 VQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDL---EKYGTEIYD--ADNIT 317
VQ ++E AL +L+ + K+ +SSRTD GVHAL ++AHFD+ K E D A++IT
Sbjct: 34 VQDVIEGALDELKPVIPVKLHVSSRTDTGVHALCNTAHFDMIFKSKRTGEPRDILAESIT 93
Query: 318 YQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYRFAV 446
+NK ++ + + K +RV D F+++ A+ RTYLYR A+
Sbjct: 94 AAVNKKLEDHD--IRIIKTLRVQDSFHSQHLAMGRTYLYRLAM 134
>UniRef50_Q3UAA3 Cluster: Pseudouridylate synthase; n=8;
Eutheria|Rep: Pseudouridylate synthase - Mus musculus
(Mouse)
Length = 280
Score = 64.1 bits (149), Expect = 1e-09
Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Frame = +3
Query: 174 ALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKY-GTEIYDADNITYQMNKSYHSNN 350
A +L S++ + +SSRTD GVHAL+++AH D+++ G + + + +N H +
Sbjct: 12 AAKRLNSVDPVRFTISSRTDAGVHALSNAAHLDIQRRPGQSPFSPEVVAKALNT--HLKH 69
Query: 351 KSVLVKKCIRVNDDFNARFTAIPRTYLYRFA 443
++ V K RV +DF+AR A RTY YR A
Sbjct: 70 PAIRVLKAFRVPNDFHARHAATSRTYQYRLA 100
>UniRef50_Q29EU3 Cluster: GA20054-PA; n=2; Diptera|Rep: GA20054-PA -
Drosophila pseudoobscura (Fruit fly)
Length = 531
Score = 62.1 bits (144), Expect = 5e-09
Identities = 31/73 (42%), Positives = 42/73 (57%)
Frame = +3
Query: 228 TDGGVHALNSSAHFDLEKYGTEIYDADNITYQMNKSYHSNNKSVLVKKCIRVNDDFNARF 407
TD GVHAL+S+ H DL + + YD +T +N++ + V V D F+ R+
Sbjct: 72 TDAGVHALHSTVHVDLARRDGQPYDTTTLTGVLNRTLDKQRLPIRVLSSQVVPDTFHCRY 131
Query: 408 TAIPRTYLYRFAV 446
AI RTYLYRFAV
Sbjct: 132 HAIGRTYLYRFAV 144
>UniRef50_Q5LNR0 Cluster: tRNA pseudouridine synthase A; n=45;
Alphaproteobacteria|Rep: tRNA pseudouridine synthase A -
Silicibacter pomeroyi
Length = 262
Score = 58.8 bits (136), Expect = 5e-08
Identities = 37/99 (37%), Positives = 53/99 (53%)
Frame = +3
Query: 141 DPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITY 320
D SVQG +E AL +L + + + RTD GVH L AH DL T +D ++
Sbjct: 23 DLPSVQGAIETALARLEPGPHT-IAAAGRTDAGVHGLGQVAHCDL----TRDWDPFRLSE 77
Query: 321 QMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYR 437
+N YH + V + RV +D++ARF+A R YL+R
Sbjct: 78 ALN--YHLKPQPVAITAAARVAEDWHARFSATERQYLFR 114
>UniRef50_Q00Z96 Cluster: Pseudouridylate synthase; n=2;
Ostreococcus|Rep: Pseudouridylate synthase -
Ostreococcus tauri
Length = 338
Score = 58.4 bits (135), Expect = 7e-08
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 7/83 (8%)
Frame = +3
Query: 219 SSRTDGGVHALNSSAHFDLEKYG----TEIYDADNITYQMNKSYHSNNKSVLVKKCIRV- 383
SSRTD GVHA +SAHFD + G + YD++++ +N S +++ V +C+RV
Sbjct: 64 SSRTDVGVHATRNSAHFDCGRVGKDGSMDAYDSESVRRGLNYHLKSRERAMRVTECVRVD 123
Query: 384 --NDDFNARFTAIPRTYLYRFAV 446
N F+AR A+ R Y Y V
Sbjct: 124 TLNPTFHARHDAVSRRYRYEILV 146
>UniRef50_Q9ZCA3 Cluster: tRNA pseudouridine synthase A; n=13;
Rickettsiales|Rep: tRNA pseudouridine synthase A -
Rickettsia prowazekii
Length = 245
Score = 58.4 bits (135), Expect = 7e-08
Identities = 41/96 (42%), Positives = 53/96 (55%)
Frame = +3
Query: 150 SVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMN 329
SVQ ++E A+ K S + S RTD GVHA+ AHFDL KY E Y I +N
Sbjct: 26 SVQQILEEAIYKFSS-EQVTLFGSGRTDAGVHAIGQVAHFDLSKY-LEPY---KIIKAIN 80
Query: 330 KSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYR 437
Y V V C V+++F+ARF+AI R Y+YR
Sbjct: 81 --YFVRPYDVGVWNCELVSNNFHARFSAISRHYIYR 114
>UniRef50_Q54RR6 Cluster: Pseudouridylate synthase; n=1;
Dictyostelium discoideum AX4|Rep: Pseudouridylate
synthase - Dictyostelium discoideum AX4
Length = 343
Score = 54.8 bits (126), Expect = 8e-07
Identities = 38/102 (37%), Positives = 56/102 (54%), Gaps = 7/102 (6%)
Frame = +3
Query: 153 VQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLE----KYGTE--IYDADNI 314
VQ ++E +L K+ P +V SSRTD GV A+ +HFD++ K G E + + +
Sbjct: 31 VQQVLEDSLEKIHGYKIP-IVGSSRTDHGVSAVGQVSHFDVKTRTSKSGIEMPLLSPEEL 89
Query: 315 TYQMNKSYHSNN-KSVLVKKCIRVNDDFNARFTAIPRTYLYR 437
T +N + KS+ + K V+D F+ RF A RTYLYR
Sbjct: 90 TMAINYNVGKEYLKSIRIIKTEIVDDKFHCRFNATSRTYLYR 131
>UniRef50_Q4RDQ2 Cluster: Chromosome undetermined SCAF16007, whole
genome shotgun sequence; n=3; Euteleostomi|Rep:
Chromosome undetermined SCAF16007, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 97
Score = 54.4 bits (125), Expect = 1e-06
Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Frame = +3
Query: 147 ESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTE-IYDADNITYQ 323
+SVQ +E AL KLR LN + +SSRTD GVHAL +SAHFDL++ + + AD +
Sbjct: 27 KSVQDHLEDALRKLRPLNPVSLSVSSRTDAGVHALCNSAHFDLQRRNDKPPFTADILVDA 86
Query: 324 MNKSYHSNNKSV 359
+N YH + +
Sbjct: 87 LN--YHLRTEQI 96
>UniRef50_A2TUS1 Cluster: Pseudouridylate synthase; n=2;
Flavobacteriaceae|Rep: Pseudouridylate synthase -
Dokdonia donghaensis MED134
Length = 263
Score = 53.6 bits (123), Expect = 2e-06
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYPKVVLSS-RTDGGVHALNSSAHFDLEKYGTEIYDADNI 314
P+ +VQ +E AL + L P +++ + RTD GVHA AHFD + + N+
Sbjct: 28 PNAVTVQETIEKALSTI--LRKPVLIMGAGRTDAGVHATQMYAHFDWDDDLSLDNKLRNL 85
Query: 315 TYQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYRFA 443
TY++N+ + + + + V D+ + RF A R+YLYR A
Sbjct: 86 TYKLNRFLPPD---IAIDRIFNVRDEAHTRFDATSRSYLYRIA 125
>UniRef50_A6DAN4 Cluster: Pseudouridylate synthase; n=1;
Caminibacter mediatlanticus TB-2|Rep: Pseudouridylate
synthase - Caminibacter mediatlanticus TB-2
Length = 223
Score = 53.2 bits (122), Expect = 2e-06
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYPKVVL-SSRTDGGVHALNSSAHFDLEKYGTEIYDADNI 314
P+ +++QG +E+AL KL N +V + RTD GVHALN F + + +D + +
Sbjct: 5 PNKKTIQGEIELALNKL---NINSIVQHAGRTDKGVHALNQVISFTIPNF----WDLNKL 57
Query: 315 TYQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
+NK H + +KK + +DFN RF A R+Y Y
Sbjct: 58 QTSLNKIIHPY---IHIKKIKFIKNDFNPRFNAKKRSYRY 94
>UniRef50_Q30RV9 Cluster: Pseudouridylate synthase; n=1;
Thiomicrospira denitrificans ATCC 33889|Rep:
Pseudouridylate synthase - Thiomicrospira denitrificans
(strain ATCC 33889 / DSM 1351)
Length = 236
Score = 52.0 bits (119), Expect = 6e-06
Identities = 35/95 (36%), Positives = 49/95 (51%)
Frame = +3
Query: 150 SVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMN 329
++ G +EIAL K+ K+V S RTD GVHA H DL Y ++ IT +
Sbjct: 26 TILGTLEIALKKINIET--KIVASGRTDRGVHASGQVCHIDLPPYWSD------ITKLQD 77
Query: 330 KSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
S+L+KK V+D F+AR++A R Y Y
Sbjct: 78 SLGRVLPPSILIKKIKIVDDTFHARYSAKRRVYRY 112
>UniRef50_Q5FPX3 Cluster: tRNA pseudouridine synthase A; n=4;
Rhodospirillales|Rep: tRNA pseudouridine synthase A -
Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 275
Score = 51.2 bits (117), Expect = 1e-05
Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Frame = +3
Query: 141 DPESVQGLMEIALLKL-RSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNIT 317
D S+QGL+E A KL R+ P + + RTD GVHA H D DA I
Sbjct: 42 DGTSIQGLIEAAASKLVRNRPVPSIT-AGRTDAGVHAAGMVIHLDFPDDAP--IDARQIR 98
Query: 318 YQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
M YH V+V + +V ++NARF+A R+Y Y
Sbjct: 99 DGM--GYHLKPHRVVVLETAKVGPEWNARFSATWRSYRY 135
>UniRef50_Q1YHJ2 Cluster: Pseudouridylate synthase; n=2;
Alphaproteobacteria|Rep: Pseudouridylate synthase -
Aurantimonas sp. SI85-9A1
Length = 259
Score = 49.6 bits (113), Expect = 3e-05
Identities = 29/73 (39%), Positives = 39/73 (53%)
Frame = +3
Query: 219 SSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMNKSYHSNNKSVLVKKCIRVNDDFN 398
+ RTD GVHA AH DL + ++ D + +N H + V + RV DDF+
Sbjct: 48 AGRTDAGVHASGQVAHVDLRRD----WEPDTVRDALNA--HLRDAPVAILSAERVADDFD 101
Query: 399 ARFTAIPRTYLYR 437
ARF+A R YLYR
Sbjct: 102 ARFSARKRFYLYR 114
>UniRef50_A0RNY9 Cluster: Pseudouridylate synthase; n=2;
Campylobacter|Rep: Pseudouridylate synthase -
Campylobacter fetus subsp. fetus (strain 82-40)
Length = 258
Score = 49.6 bits (113), Expect = 3e-05
Identities = 31/105 (29%), Positives = 58/105 (55%)
Frame = +3
Query: 120 KDGRDYPDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIY 299
K + PD +V+ + AL ++ + VV SSRTD GVHA++ + + ++ E +
Sbjct: 16 KGSQTQPDKNAVEDCLNFALNRVGI--FKPVVSSSRTDKGVHAISQVSCVECGEFWNERF 73
Query: 300 DADNITYQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
+ + Q+NK H+ + +K +V+D+F+ R+ A+ R+Y Y
Sbjct: 74 E--RLKNQINK--HTK-PYIYIKNIQKVSDEFHPRYDAVARSYRY 113
>UniRef50_Q4FNF9 Cluster: Pseudouridylate synthase; n=6;
Bacteria|Rep: Pseudouridylate synthase - Pelagibacter
ubique
Length = 246
Score = 49.2 bits (112), Expect = 4e-05
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Frame = +3
Query: 180 LKLRSLNYPKVVL--SSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMNKSYHSNNK 353
+KL KVVL S RTD GVHA+ SAHFD +K EI + D + +N + N+K
Sbjct: 33 VKLSKFLKEKVVLIGSGRTDAGVHAIEQSAHFDCKK---EIQNLDKLLKSIN--HFINDK 87
Query: 354 SVLVKKCIRVNDDFNARFTAIPRTYLY 434
+ V + + F+AR +A R Y Y
Sbjct: 88 GISVLAIKKRSLKFHARHSAKQRIYKY 114
>UniRef50_A6Q408 Cluster: Pseudouridylate synthase; n=2;
unclassified Epsilonproteobacteria|Rep: Pseudouridylate
synthase - Nitratiruptor sp. (strain SB155-2)
Length = 241
Score = 49.2 bits (112), Expect = 4e-05
Identities = 26/76 (34%), Positives = 42/76 (55%)
Frame = +3
Query: 207 KVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMNKSYHSNNKSVLVKKCIRVN 386
K+V S RTD GVHA HFDL + +E+ N+ + + Y + +K+ ++V
Sbjct: 43 KIVGSGRTDKGVHATAQVIHFDLPPFWSELERLQNLLNESLRPY------IQIKRVVKVP 96
Query: 387 DDFNARFTAIPRTYLY 434
+F+AR++A R Y Y
Sbjct: 97 KEFHARYSAKRRAYRY 112
>UniRef50_O84469 Cluster: tRNA pseudouridine synthase A; n=7;
Chlamydiaceae|Rep: tRNA pseudouridine synthase A -
Chlamydia trachomatis
Length = 267
Score = 49.2 bits (112), Expect = 4e-05
Identities = 29/103 (28%), Positives = 51/103 (49%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNIT 317
P+ S+Q ++E L K+ V+ S RTD GVHA AHF + D I
Sbjct: 23 PNALSIQEVLETILKKIAGFRI-SVISSGRTDAGVHAQGQIAHFHCPDH-PHFTDPRQIQ 80
Query: 318 YQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYRFAV 446
+N + ++++ + ++DF++RF+AI + Y Y ++
Sbjct: 81 KMLNALLPHD---IVIRDAVMTDEDFHSRFSAIAKEYRYTLSL 120
>UniRef50_Q64XV0 Cluster: tRNA pseudouridine synthase A; n=16;
Bacteroidetes|Rep: tRNA pseudouridine synthase A -
Bacteroides fragilis
Length = 252
Score = 48.4 bits (110), Expect = 7e-05
Identities = 30/76 (39%), Positives = 40/76 (52%)
Frame = +3
Query: 207 KVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMNKSYHSNNKSVLVKKCIRVN 386
+V+ + RTD GVHA AHFD Y E D D + ++N+ + + V K RV
Sbjct: 46 EVIGAGRTDAGVHASLMVAHFD---YEGEPLDVDKVAEKLNRLL---PQDISVYKVCRVK 99
Query: 387 DDFNARFTAIPRTYLY 434
D +ARF A RTY Y
Sbjct: 100 PDAHARFDATARTYKY 115
>UniRef50_P47428 Cluster: tRNA pseudouridine synthase A; n=3;
Mycoplasma|Rep: tRNA pseudouridine synthase A -
Mycoplasma genitalium
Length = 244
Score = 48.0 bits (109), Expect = 9e-05
Identities = 33/99 (33%), Positives = 49/99 (49%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNIT 317
P+ ++QGL+E + + KV+ S RTD GVHA+N + H D+ EI N+
Sbjct: 22 PNLATIQGLLEQSFSLIIGRKI-KVIGSGRTDKGVHAINQTFHVDI---NGEI----NLN 73
Query: 318 YQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
+ K +VK + VND F+ARF + Y Y
Sbjct: 74 LLIRKINQLIKPHCIVKTLVLVNDSFHARFQVKTKVYEY 112
>UniRef50_A7AKE9 Cluster: Putative uncharacterized protein; n=2;
Bacteroidales|Rep: Putative uncharacterized protein -
Parabacteroides merdae ATCC 43184
Length = 297
Score = 47.6 bits (108), Expect = 1e-04
Identities = 36/99 (36%), Positives = 51/99 (51%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNIT 317
P+ +VQ +E AL L P +V + RTD GVHA AHFD ++ I D +
Sbjct: 65 PNGITVQQSIEEALATLLRQPVP-IVGAGRTDAGVHARLMVAHFDWQE---PIADLAFLA 120
Query: 318 YQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
++N+ K + V + + V D +ARF AI RTY Y
Sbjct: 121 EKLNRLLP---KDIAVYRIVPVRPDAHARFDAISRTYKY 156
>UniRef50_Q83G11 Cluster: tRNA pseudouridine synthase A; n=3;
Tropheryma whipplei|Rep: tRNA pseudouridine synthase A -
Tropheryma whipplei (strain Twist) (Whipple's bacillus)
Length = 267
Score = 47.6 bits (108), Expect = 1e-04
Identities = 30/100 (30%), Positives = 54/100 (54%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNIT 317
P +V GL+ + L+L P +V+++RTD GVHAL H DL ++ +
Sbjct: 24 PGLRTVGGLI-LDALRLICSEPPDIVVAARTDAGVHALQQVCHVDLISSPDPVW----LL 78
Query: 318 YQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYR 437
+++ +S + + + ++ +F+ARF+AI R Y+YR
Sbjct: 79 HRL-RSLLKSETDLHILSAVKAPVNFHARFSAIGRRYVYR 117
>UniRef50_Q7U335 Cluster: tRNA pseudouridine synthase A; n=7;
Gammaproteobacteria|Rep: tRNA pseudouridine synthase A -
Haemophilus ducreyi
Length = 261
Score = 47.6 bits (108), Expect = 1e-04
Identities = 33/95 (34%), Positives = 49/95 (51%)
Frame = +3
Query: 150 SVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMN 329
SVQ +E AL K+ + +V + RTD GVH HFD TE+ + ++
Sbjct: 25 SVQQTLEEALSKVTNTTI-EVFCAGRTDSGVHGTGQVVHFD-----TEV-ERPLASWCFG 77
Query: 330 KSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
+ H N + VK ++V +DF+ARF+A R Y Y
Sbjct: 78 TNAHLAN-DIAVKWAVKVAEDFHARFSATARRYRY 111
>UniRef50_A6DH96 Cluster: Pseudouridylate synthase; n=1;
Lentisphaera araneosa HTCC2155|Rep: Pseudouridylate
synthase - Lentisphaera araneosa HTCC2155
Length = 276
Score = 46.8 bits (106), Expect = 2e-04
Identities = 32/98 (32%), Positives = 50/98 (51%)
Frame = +3
Query: 141 DPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITY 320
D E+VQ +E AL L + + K+ S RTD GVHA A F K + +D +
Sbjct: 23 DFEAVQEQIEKALNTLYNCSEIKIDGSGRTDAGVHAFGLCATFTEPKISK--FTSDTLRK 80
Query: 321 QMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
+N S+ ++ ++ DF+ARF+ I +TY+Y
Sbjct: 81 GLNALL---PVSIRIRSALQCETDFHARFSCIGKTYVY 115
>UniRef50_A0L9F6 Cluster: Pseudouridylate synthase; n=1;
Magnetococcus sp. MC-1|Rep: Pseudouridylate synthase -
Magnetococcus sp. (strain MC-1)
Length = 270
Score = 46.8 bits (106), Expect = 2e-04
Identities = 38/97 (39%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Frame = +3
Query: 150 SVQGLMEIALLKLRSLNYP-KVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQM 326
SVQ +E AL L N P +V S RTD GVHA AHFD + D TY
Sbjct: 37 SVQQALEQALAPLH--NEPIRVHGSGRTDAGVHATGQVAHFDAPAH------RDAATYLR 88
Query: 327 NKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYR 437
+ + + S+ V C V + F+AR+ A R YLYR
Sbjct: 89 ILNVRTPH-SIAVLACQPVAESFHARYDAYYRQYLYR 124
>UniRef50_Q47LM3 Cluster: Pseudouridylate synthase; n=2;
Actinomycetales|Rep: Pseudouridylate synthase -
Thermobifida fusca (strain YX)
Length = 296
Score = 46.4 bits (105), Expect = 3e-04
Identities = 29/102 (28%), Positives = 51/102 (50%)
Frame = +3
Query: 132 DYPDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADN 311
+ P +VQG ++ AL ++ + P++ ++ RTD GVHA AH D+ +++A+
Sbjct: 43 EQPGRRTVQGELQAALARVLRIPTPQLTVAGRTDAGVHARGQVAHVDVP---ASVWEAEG 99
Query: 312 ITYQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYR 437
+ + V V F+ARF+A+ R Y+YR
Sbjct: 100 -ERLLRRLAGVLPPDVRVTAVAPAPPGFDARFSALFRRYVYR 140
>UniRef50_Q1MM77 Cluster: Pseudouridylate synthase; n=13;
Alphaproteobacteria|Rep: Pseudouridylate synthase -
Rhizobium leguminosarum bv. viciae (strain 3841)
Length = 272
Score = 46.4 bits (105), Expect = 3e-04
Identities = 35/96 (36%), Positives = 46/96 (47%)
Frame = +3
Query: 150 SVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMN 329
SVQG +E A+L L V + RTD GVHA+ H DL K + Y N +N
Sbjct: 26 SVQGAIEAAVLSLTGETV-SVRGAGRTDSGVHAMGQVIHADLSKDWSP-YQLQN---ALN 80
Query: 330 KSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYR 437
+ V V + F+ARF+A+ R YLYR
Sbjct: 81 AHLRIAGERVSVLDVEAAPEFFDARFSALRRHYLYR 116
>UniRef50_A4XKB7 Cluster: Pseudouridylate synthase; n=3;
Clostridiales|Rep: Pseudouridylate synthase -
Caldicellulosiruptor saccharolyticus (strain ATCC 43494
/ DSM 8903)
Length = 244
Score = 46.4 bits (105), Expect = 3e-04
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLE-KYGTEIYDADNI 314
P+ ++VQG++E A+ K+ + +V S RTD GVHAL A+F E K TE
Sbjct: 22 PNKKTVQGVIEDAIKKITGEDV-NLVGSGRTDRGVHALGQKANFKTESKIPTE-----KF 75
Query: 315 TYQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
+N ++ + +K V+ DF+AR++A +TY Y
Sbjct: 76 PLALNSVLPND---ISIKDAAEVSLDFSARYSAKQKTYKY 112
>UniRef50_Q9PPV4 Cluster: tRNA pseudouridine synthase A; n=1;
Ureaplasma parvum|Rep: tRNA pseudouridine synthase A -
Ureaplasma parvum (Ureaplasma urealyticum biotype 1)
Length = 241
Score = 46.0 bits (104), Expect = 4e-04
Identities = 32/99 (32%), Positives = 54/99 (54%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNIT 317
P +VQG +E + +N +++ S RTD GVHA + F + K+ YD+ +I
Sbjct: 21 PQKRTVQGDLEEIFKSIFKINNIRIIGSGRTDKGVHAYEQT--FSV-KHSALKYDS-HII 76
Query: 318 YQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
YQ S S++ +L + +V+D F+A++ A +TY Y
Sbjct: 77 YQALCSRTSSDIQIL--EVQKVDDSFHAQYNATSKTYQY 113
>UniRef50_Q72I65 Cluster: tRNA pseudouridine synthase A; n=3;
Thermus thermophilus|Rep: tRNA pseudouridine synthase A
- Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM
7039)
Length = 253
Score = 46.0 bits (104), Expect = 4e-04
Identities = 35/99 (35%), Positives = 50/99 (50%)
Frame = +3
Query: 150 SVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMN 329
+VQG +E AL + +L PK V + RTD GVHAL H D+E + + +N
Sbjct: 27 TVQGELERALPGIGAL--PKAVAAGRTDAGVHALAMPFHVDVE----SAIPVEKVPEALN 80
Query: 330 KSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYRFAV 446
+ + K V ++ V DF+AR A+ R Y YR V
Sbjct: 81 RLLPEDLKVVGARE---VAPDFHARKDALWRAYRYRILV 116
>UniRef50_UPI000050FF8C Cluster: COG0101: Pseudouridylate synthase;
n=1; Brevibacterium linens BL2|Rep: COG0101:
Pseudouridylate synthase - Brevibacterium linens BL2
Length = 284
Score = 45.6 bits (103), Expect = 5e-04
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 8/110 (7%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIY------ 299
P +VQ +E L ++ +V + RTD GVHA H DL + G E
Sbjct: 22 PGLRTVQDSLEAGLSRITGAEVATIV-AGRTDAGVHARRQVVHIDLAEEGIEKLIGKSSR 80
Query: 300 --DADNITYQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYRFA 443
+A ++ + +++ V +DF+ARF+A+ RTY YR A
Sbjct: 81 PAEAALLSRLRGVLTVDDTDDIVIHAVSEVPEDFDARFSALWRTYQYRLA 130
>UniRef50_Q11XU3 Cluster: Pseudouridylate synthase; n=1; Cytophaga
hutchinsonii ATCC 33406|Rep: Pseudouridylate synthase -
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
Length = 248
Score = 45.6 bits (103), Expect = 5e-04
Identities = 34/99 (34%), Positives = 52/99 (52%)
Frame = +3
Query: 150 SVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMN 329
+VQG+++ AL + ++ S RTD GVHA + H D K EI A + +++N
Sbjct: 25 TVQGVLQKALSNVLGAKID-ILGSGRTDTGVHASSQIVHLDSPK---EIDAA--LIFRIN 78
Query: 330 KSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYRFAV 446
Y K + +K V DD +ARF A+ R Y+YR +
Sbjct: 79 -GYLP--KDICIKSARLVQDDAHARFDALSRAYVYRITL 114
>UniRef50_A1AXN3 Cluster: Pseudouridylate synthase; n=3;
Bacteria|Rep: Pseudouridylate synthase - Ruthia
magnifica subsp. Calyptogena magnifica
Length = 247
Score = 45.6 bits (103), Expect = 5e-04
Identities = 37/102 (36%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYP-KVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNI 314
P+ +VQ ++E AL + N+P +V S RTD GVHA HF+ T I + +
Sbjct: 22 PNIRTVQQVVEQALSSVA--NHPVRVFCSGRTDAGVHATCQVIHFE-----TNIKRENKV 74
Query: 315 -TYQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYR 437
+ N + S+ VK VND+F+ARF+AI R Y Y+
Sbjct: 75 WLFGGNANLPSDVNFTWVK---HVNDNFHARFSAIARQYNYK 113
>UniRef50_Q9PP96 Cluster: tRNA pseudouridine synthase A; n=13;
Campylobacter|Rep: tRNA pseudouridine synthase A -
Campylobacter jejuni
Length = 241
Score = 45.2 bits (102), Expect = 7e-04
Identities = 33/102 (32%), Positives = 50/102 (49%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNIT 317
P + VQ + AL L + ++++SRTD GVHA + A + Y T + + +
Sbjct: 22 PHKKGVQDALSGALSHLGI--FSPLLMASRTDKGVHASYAVASVECGDYFTNL---EYLQ 76
Query: 318 YQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYRFA 443
Q+NK H + +KK +V DDF RF R Y Y F+
Sbjct: 77 KQLNKFSHP---FIHIKKIEKVKDDFEVRFDVKSREYRYIFS 115
>UniRef50_A7I1Z3 Cluster: tRNA pseudouridine synthase A; n=1;
Campylobacter hominis ATCC BAA-381|Rep: tRNA
pseudouridine synthase A - Campylobacter hominis (strain
ATCC BAA-381 / LMG 19568 / NCTC 13146 /CH001A)
Length = 278
Score = 44.8 bits (101), Expect = 9e-04
Identities = 31/99 (31%), Positives = 55/99 (55%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNIT 317
P+ ++V+ + AL + +N KV+ +SRTD GVHAL+ + + +D N+
Sbjct: 25 PNGKAVEDRLNSALFRC-GIN-EKVISASRTDKGVHALSQVS----TTHCAAFWDLQNLR 78
Query: 318 YQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
+ +N+ H+ S+ V+K R +++F RF A R+Y Y
Sbjct: 79 HFINR--HA-KPSIYVRKIERADENFQVRFDAKARSYRY 114
>UniRef50_Q9KTA4 Cluster: tRNA pseudouridine synthase A; n=29;
Gammaproteobacteria|Rep: tRNA pseudouridine synthase A -
Vibrio cholerae
Length = 264
Score = 44.8 bits (101), Expect = 9e-04
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Frame = +3
Query: 147 ESVQGLMEIALLKLRSLNYP-KVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQ 323
+SVQ +E AL K+ N+P +V + RTD GVH HFD + + +
Sbjct: 24 KSVQEALEKALSKIA--NHPVEVQCAGRTDAGVHGTGQVVHFDTTA------ERQMVAWT 75
Query: 324 MNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
M + + K + V+ + V D+F+ARF+A R Y Y
Sbjct: 76 MGANANLP-KDIAVRWAMAVPDEFHARFSATARRYRY 111
>UniRef50_Q820P8 Cluster: tRNA pseudouridine synthase A; n=10;
Proteobacteria|Rep: tRNA pseudouridine synthase A -
Nitrosomonas europaea
Length = 272
Score = 44.8 bits (101), Expect = 9e-04
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Frame = +3
Query: 123 DGRDY------PDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKY 284
DGR Y P SVQ +E AL + +VV + RTD GVHAL H +
Sbjct: 21 DGRGYCGWQKQPGCLSVQSRLESALSGVAGRQI-QVVAAGRTDAGVHALCQVVHLE---- 75
Query: 285 GTEIYDADNITYQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
T + N + + + S+L + V+DDF+ARF+A RTYLY
Sbjct: 76 -TCVRRPLNAWIRGTNALLPGDISIL--EASEVSDDFHARFSATERTYLY 122
>UniRef50_Q1FEL6 Cluster: Pseudouridylate synthase; n=1; Clostridium
phytofermentans ISDg|Rep: Pseudouridylate synthase -
Clostridium phytofermentans ISDg
Length = 264
Score = 44.4 bits (100), Expect = 0.001
Identities = 33/95 (34%), Positives = 51/95 (53%)
Frame = +3
Query: 150 SVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMN 329
S+QGL+E L K+ L K++ S RTD GVHAL A+F Y D + I +MN
Sbjct: 37 SIQGLLEEFLSKVL-LEPIKLIGSGRTDTGVHALGQVANF----YSRSNLDVNIIRQKMN 91
Query: 330 KSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
+ + K + + V+ +F++RF A+ + Y Y
Sbjct: 92 QVLPEDIK---ILQANEVDLNFHSRFDAVEKIYQY 123
>UniRef50_A7DDE8 Cluster: tRNA pseudouridine synthase A; n=3;
Rhizobiales|Rep: tRNA pseudouridine synthase A -
Methylobacterium extorquens PA1
Length = 300
Score = 44.4 bits (100), Expect = 0.001
Identities = 31/99 (31%), Positives = 49/99 (49%)
Frame = +3
Query: 141 DPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITY 320
D +VQ +E A+ + S ++ + RTD GVHA++ AH DL K + D +
Sbjct: 73 DDPTVQAAIETAVTRF-SGETARLTCAGRTDAGVHAIHQVAHLDLAK----DWRTDTVRD 127
Query: 321 QMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYR 437
+N ++L + V +F+AR +AI R Y YR
Sbjct: 128 ALNARLRPQPVAILSAEV--VPQEFDARHSAIRRHYRYR 164
>UniRef50_Q5PAN6 Cluster: tRNA pseudouridine synthase A; n=12;
Alphaproteobacteria|Rep: tRNA pseudouridine synthase A -
Anaplasma marginale (strain St. Maries)
Length = 247
Score = 44.4 bits (100), Expect = 0.001
Identities = 35/96 (36%), Positives = 49/96 (51%)
Frame = +3
Query: 150 SVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMN 329
SVQ +E A+ +L S V + RTD GVHAL HFDL T + D I +N
Sbjct: 27 SVQESIEDAIYRL-SQQCVTVFAAGRTDAGVHALGQVVHFDL---NTSLQDY-VIKNALN 81
Query: 330 KSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYR 437
S+ S+L + + F+ARF+A R Y+Y+
Sbjct: 82 HYLRSDMVSILSLE--EAAEGFHARFSAKKRHYMYK 115
>UniRef50_Q8XXX8 Cluster: tRNA pseudouridine synthase A; n=50;
Betaproteobacteria|Rep: tRNA pseudouridine synthase A -
Ralstonia solanacearum (Pseudomonas solanacearum)
Length = 274
Score = 43.6 bits (98), Expect = 0.002
Identities = 33/99 (33%), Positives = 47/99 (47%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNIT 317
P +VQ ++E AL + + P V + RTD GVHAL H D E + D +
Sbjct: 22 PHGNTVQDVLEAALREFAGVALPTTV-AGRTDAGVHALGQVVHLDTEL----VRDPFSWV 76
Query: 318 YQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
N +V V+ + +DF+ARF+A RTY Y
Sbjct: 77 RGTNAFLPP---TVAVRWAQAMPEDFHARFSAHRRTYYY 112
>UniRef50_Q72DL8 Cluster: tRNA pseudouridine synthase A; n=2;
Desulfovibrio vulgaris subsp. vulgaris|Rep: tRNA
pseudouridine synthase A - Desulfovibrio vulgaris
(strain Hildenborough / ATCC 29579 / NCIMB8303)
Length = 297
Score = 43.6 bits (98), Expect = 0.002
Identities = 29/100 (29%), Positives = 47/100 (47%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNIT 317
P P +VQG++E + ++ ++ + RTD GVHA AH D+ + + I
Sbjct: 27 PRPRTVQGVLEPIVSRMAG-EQVRLHAAGRTDAGVHADGQVAHVDIPDHKLGVDWQKAIN 85
Query: 318 YQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYR 437
Q+ + + R DDF+ARF A+ + Y YR
Sbjct: 86 AQLPDD-------ICILDVRRAADDFHARFDALGKRYTYR 118
>UniRef50_Q6NKP7 Cluster: Pseudouridylate synthase; n=8;
Magnoliophyta|Rep: Pseudouridylate synthase -
Arabidopsis thaliana (Mouse-ear cress)
Length = 372
Score = 43.2 bits (97), Expect = 0.003
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Frame = +3
Query: 150 SVQGLMEIALLKLRSLNYP-KVVLSSRTDGGVHALNSSAHFDLEKYGT----EI---YDA 305
+V G+++ A K + P K+ SSRTD GVHAL++ H D+E+ E+ ++
Sbjct: 79 TVVGVLQEAFHKF--IGQPVKIFCSSRTDAGVHALSNVCHVDVERISKRKPGEVLPPHEP 136
Query: 306 DNITYQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYR 437
+ +N + V+V V +++AR+ A RTY YR
Sbjct: 137 GVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARYKAQERTYFYR 180
>UniRef50_Q8DWH1 Cluster: tRNA pseudouridine synthase A; n=42;
Lactobacillales|Rep: tRNA pseudouridine synthase A -
Streptococcus mutans
Length = 249
Score = 43.2 bits (97), Expect = 0.003
Identities = 30/97 (30%), Positives = 48/97 (49%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNIT 317
P +VQ +E LL+L S K+ + RTD GVHA HFDL + D + +
Sbjct: 22 PQVRTVQEEIEKTLLRLNSGQAVKIHGAGRTDAGVHAYGQVIHFDLPQQ----RDLEKLR 77
Query: 318 YQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTY 428
+ ++ + + V+ +V DDF+AR+ +TY
Sbjct: 78 FGLDTQTPDDIDVIQVE---QVADDFHARYQKHRKTY 111
>UniRef50_Q6G7A2 Cluster: tRNA pseudouridine synthase A; n=16;
Staphylococcus|Rep: tRNA pseudouridine synthase A -
Staphylococcus aureus (strain MSSA476)
Length = 267
Score = 43.2 bits (97), Expect = 0.003
Identities = 26/87 (29%), Positives = 42/87 (48%)
Frame = +3
Query: 177 LLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMNKSYHSNNKS 356
LL+ + ++ SSRTD GVHA+ HFD E Y MN++ +
Sbjct: 33 LLQRMHKRHVRIHPSSRTDRGVHAIQQYFHFDTELN----IPMSQWQYAMNRTLPDD--- 85
Query: 357 VLVKKCIRVNDDFNARFTAIPRTYLYR 437
+ V + V+DDF+ R+ + + Y Y+
Sbjct: 86 IYVNNVVTVDDDFHCRYDCVGKRYRYK 112
>UniRef50_P70830 Cluster: tRNA pseudouridine synthase A; n=3;
Borrelia burgdorferi group|Rep: tRNA pseudouridine
synthase A - Borrelia burgdorferi (Lyme disease
spirochete)
Length = 246
Score = 43.2 bits (97), Expect = 0.003
Identities = 33/99 (33%), Positives = 49/99 (49%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNIT 317
P +VQG +E AL+K+ K+ S RTD GVHA FD+ K ++ +N+
Sbjct: 22 PTKPTVQGEIEKALMKINKKKV-KIHSSGRTDKGVHAKKQIITFDI-KINIQL---NNLK 76
Query: 318 YQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
+N N S+ + K V + F+ RF+A R Y Y
Sbjct: 77 KALNAILLKN--SIKILKLRYVKNSFHPRFSAQKRKYSY 113
>UniRef50_A6C4N8 Cluster: Pseudouridylate synthase; n=1;
Planctomyces maris DSM 8797|Rep: Pseudouridylate
synthase - Planctomyces maris DSM 8797
Length = 267
Score = 42.7 bits (96), Expect = 0.003
Identities = 31/99 (31%), Positives = 49/99 (49%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNIT 317
P+ SVQ +E A+ +L P V+++ RTD GVHAL A F E N+
Sbjct: 22 PNGPSVQACVEKAIEQLTQQRSP-VLVAGRTDAGVHALGQVASFQTE----SAIPCKNLQ 76
Query: 318 YQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
+ + +S+ V++ V DF+A ++AI + Y Y
Sbjct: 77 TGLQRFL---PESICVREVREVPPDFHATYSAIQKRYRY 112
>UniRef50_Q6AD25 Cluster: tRNA pseudouridine synthase A; n=4;
Actinobacteria (class)|Rep: tRNA pseudouridine synthase
A - Leifsonia xyli subsp. xyli
Length = 288
Score = 42.7 bits (96), Expect = 0.003
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLR--SLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADN 311
PD +VQG +E AL + S P + ++ RTD GVHA AH DL + +
Sbjct: 26 PDLRTVQGTLEEALATIFRCSGEPPSLTVAGRTDAGVHATGQVAHVDLSPEQVALLRRPH 85
Query: 312 ITYQMNKSYHSNNK----------SVLVKKCIRVNDDFNARFTAIPRTYLYRFA 443
+ ++ + + VLV + F+ARF+A+ R Y YR A
Sbjct: 86 GKREPQLAHDALKRRVNGVLGPVPDVLVSRATEAPAGFDARFSALWRRYEYRVA 139
>UniRef50_P60349 Cluster: tRNA pseudouridine synthase A; n=13;
Actinomycetales|Rep: tRNA pseudouridine synthase A -
Corynebacterium diphtheriae
Length = 288
Score = 42.7 bits (96), Expect = 0.003
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Frame = +3
Query: 114 WLKDGRDYPDPESVQGLMEIALLKLRSLNYP-KVVLSSRTDGGVHALNSSAHFDLEKYGT 290
W + G D +VQ ++E L + L P + ++ RTD GVHA AHFD++
Sbjct: 22 WARQGDS--DLRTVQKIIEDTLTLV--LQRPIDLTVAGRTDAGVHATGQVAHFDVDPAAL 77
Query: 291 EIYD-ADNITYQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYR 437
E A + + + V + V +F+ARF+A+ R Y+YR
Sbjct: 78 ETRSIAGDPARLIRRLARLMPDDVRIHNMSFVPAEFDARFSALRRHYVYR 127
>UniRef50_Q3A9U9 Cluster: Pseudouridylate synthase; n=1;
Carboxydothermus hydrogenoformans Z-2901|Rep:
Pseudouridylate synthase - Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008)
Length = 246
Score = 42.3 bits (95), Expect = 0.005
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Frame = +3
Query: 144 PESVQGLMEIALLKLRSLNYP-KVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITY 320
P+++QG++E L K+ L P KV+ + RTD GVHAL +F D I
Sbjct: 28 PQTIQGILEEKLHKI--LKEPVKVIGAGRTDAGVHALGQVVNFSAPWKA----PVDKIPE 81
Query: 321 QMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
+N + + ++ V + V DDF+AR++A + Y Y
Sbjct: 82 ILNNTLPT---AIRVLEAEIVPDDFHARYSARKKEYRY 116
>UniRef50_Q057U4 Cluster: Pseudouridylate synthase; n=1; Buchnera
aphidicola str. Cc (Cinara cedri)|Rep: Pseudouridylate
synthase - Buchnera aphidicola subsp. Cinara cedri
Length = 269
Score = 42.3 bits (95), Expect = 0.005
Identities = 30/95 (31%), Positives = 51/95 (53%)
Frame = +3
Query: 150 SVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMN 329
++Q +E AL K+ + +V+ + RTD GVHA+ HF + I + + +
Sbjct: 25 TIQECIEHALSKIANSKI-EVICAGRTDKGVHAITQIVHF-----SSLIIRNEEVWFTGL 78
Query: 330 KSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
S N +VL K +V+ +F+ARF+A+ R+Y Y
Sbjct: 79 NSLLPKNITVLWLK--KVSSNFHARFSALSRSYRY 111
>UniRef50_A7C1F2 Cluster: tRNA pseudouridine synthase A; n=1;
Beggiatoa sp. PS|Rep: tRNA pseudouridine synthase A -
Beggiatoa sp. PS
Length = 272
Score = 42.3 bits (95), Expect = 0.005
Identities = 36/101 (35%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYP-KVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNI 314
P SVQG +EIAL K+ N+P KV+ + RTD GVHA+ H D+
Sbjct: 21 PHARSVQGEVEIALSKVA--NHPVKVICAGRTDTGVHAIGQVIHADV--------TVQRS 70
Query: 315 TYQMNKSYHSNNK-SVLVKKCIRVNDDFNARFTAIPRTYLY 434
T +SN V + V+++F+ARF+A R Y Y
Sbjct: 71 TRSWVLGTNSNLPIDVSMLWAQSVDNNFHARFSAQARHYRY 111
>UniRef50_Q5L3Q7 Cluster: tRNA pseudouridine synthase A; n=11;
Bacillaceae|Rep: tRNA pseudouridine synthase A -
Geobacillus kaustophilus
Length = 258
Score = 42.3 bits (95), Expect = 0.005
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNIT 317
P +VQG E L ++ +V S RTD GVHA HFD T + +
Sbjct: 23 PGKRTVQGEFEEVLRRMHKGTKVRVAASGRTDAGVHAYGQVIHFD-----TPLSLSSE-- 75
Query: 318 YQMNKSYHSNNKSVLVKKCIRVND-DFNARFTAIPRTYLYR 437
Q K+ ++ +V + ++ D DF+ARF+A + Y Y+
Sbjct: 76 -QWKKALNAQLPDDIVVRFVQEADADFHARFSAKAKEYRYK 115
>UniRef50_UPI0000E87E98 Cluster: tRNA pseudouridine synthase A; n=1;
Methylophilales bacterium HTCC2181|Rep: tRNA
pseudouridine synthase A - Methylophilales bacterium
HTCC2181
Length = 264
Score = 41.9 bits (94), Expect = 0.006
Identities = 30/99 (30%), Positives = 47/99 (47%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNIT 317
PD +++QGL+E AL ++ + S RTD GVHAL HFD K +T
Sbjct: 21 PDVKTIQGLIESALTEIAK-DTVITHASGRTDSGVHALGQIIHFDTTKNRP-------LT 72
Query: 318 YQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
+ S+ V+ +++ F+AR + + R Y Y
Sbjct: 73 AWVKGVNAFLPSSIKVRWAKNISESFHARHSVLEREYQY 111
>UniRef50_Q21IY8 Cluster: Pseudouridylate synthase; n=2;
Gammaproteobacteria|Rep: Pseudouridylate synthase -
Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM
17024)
Length = 289
Score = 41.9 bits (94), Expect = 0.006
Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Frame = +3
Query: 129 RDYPDPESVQGLMEIALLKLRSLNYP-KVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDA 305
R P +VQ +E AL + N P +V + RTD GVHA + HFD +
Sbjct: 41 RQLTAPNTVQAELEKALSSVA--NEPVTIVCAGRTDAGVHATSQIVHFD------TLAGR 92
Query: 306 DNITYQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
+ + + H S+ V V DF+ARF+A+ RTY Y
Sbjct: 93 PSKAWLQGVNTHL-PFSIRVISAKEVGFDFHARFSALSRTYRY 134
>UniRef50_A2ZIV2 Cluster: Pseudouridylate synthase; n=2; Oryza
sativa|Rep: Pseudouridylate synthase - Oryza sativa
subsp. indica (Rice)
Length = 257
Score = 41.5 bits (93), Expect = 0.008
Identities = 26/76 (34%), Positives = 37/76 (48%)
Frame = +3
Query: 210 VVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMNKSYHSNNKSVLVKKCIRVND 389
+ SSRTD GVHAL++ H D+E+ + N ++V V
Sbjct: 19 IFCSSRTDTGVHALSNVCHVDVERIS-----------KRKPGEMKNEGDIMVTDVRCVAP 67
Query: 390 DFNARFTAIPRTYLYR 437
DF+AR+ A+ RTY YR
Sbjct: 68 DFHARYKALERTYHYR 83
>UniRef50_Q6I3T8 Cluster: tRNA pseudouridine synthase A 2; n=12;
Bacillus|Rep: tRNA pseudouridine synthase A 2 - Bacillus
anthracis
Length = 245
Score = 41.5 bits (93), Expect = 0.008
Identities = 28/96 (29%), Positives = 52/96 (54%)
Frame = +3
Query: 150 SVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMN 329
++QG +E + ++ +++ SRTD GVHALN A+F ++ E + +N
Sbjct: 27 TIQGKIESVISEMVGKE-TEIIGCSRTDAGVHALNQVANFQSDEKLVE----HKVKKYLN 81
Query: 330 KSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYR 437
+ Y N+ + + V+D F+AR+ + +TYLY+
Sbjct: 82 Q-YLPND--ISITNVEEVHDRFHARYNSKAKTYLYK 114
>UniRef50_A6EFU7 Cluster: Pseudouridylate synthase; n=1; Pedobacter
sp. BAL39|Rep: Pseudouridylate synthase - Pedobacter sp.
BAL39
Length = 267
Score = 41.1 bits (92), Expect = 0.011
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Frame = +3
Query: 87 FVHRSSEKIWLKDGRDYPDPESVQGLMEIALLKLRSLNYP-KVVLSSRTDGGVHALNSSA 263
FVH + + P +VQG++E L ++ L P +++ RTD VHA
Sbjct: 4 FVHIGYHGLHYNGWQKQPGVLNVQGVLEKTLSQV--LKRPVEIIGCGRTDAHVHASQFFF 61
Query: 264 HFDLEKYGTEIYDADNITYQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
H D+E E +D D + +++NKS +N + V I + +ARF A+ R+Y Y
Sbjct: 62 HMDIE----EAWDFD-LIFRLNKSLPTN---IAVFDVIPMPGLQHARFDAVQRSYDY 110
>UniRef50_Q89ZY4 Cluster: tRNA pseudouridine synthase A; n=3;
Bacteroides|Rep: tRNA pseudouridine synthase A -
Bacteroides thetaiotaomicron
Length = 269
Score = 41.1 bits (92), Expect = 0.011
Identities = 32/99 (32%), Positives = 49/99 (49%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNIT 317
P+ SVQ + AL + +V+ + RTD GVHA AHFD E ++ D +
Sbjct: 22 PNGSSVQECLMKALSTFLRRDV-EVIGAGRTDAGVHASLMVAHFDHE----DVLDTVTVA 76
Query: 318 YQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
++N+ + + V + +V D +ARF A RTY Y
Sbjct: 77 DKLNRLLPPD---ISVYRVRQVKPDAHARFDATARTYKY 112
>UniRef50_O66953 Cluster: tRNA pseudouridine synthase A; n=1;
Aquifex aeolicus|Rep: tRNA pseudouridine synthase A -
Aquifex aeolicus
Length = 241
Score = 41.1 bits (92), Expect = 0.011
Identities = 31/100 (31%), Positives = 53/100 (53%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNIT 317
P+ +VQG ++ AL ++ + KV RTD GVHAL+ A+F +K + + +
Sbjct: 22 PNLRTVQGEIQKALSQILCEDV-KVTGCCRTDSGVHALDYIANFKTQK----DFPEEKLL 76
Query: 318 YQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYR 437
+N + VKK V+++FNAR++ + YLY+
Sbjct: 77 KALNGILPKDVGVYAVKK---VSEEFNARYSVKGKVYLYK 113
>UniRef50_Q3Y386 Cluster: Pseudouridylate synthase; n=3;
Firmicutes|Rep: Pseudouridylate synthase - Enterococcus
faecium DO
Length = 246
Score = 40.7 bits (91), Expect = 0.014
Identities = 28/98 (28%), Positives = 54/98 (55%)
Frame = +3
Query: 141 DPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITY 320
D +++QG +E L ++ + +++ S RTD G HA A+F K TEI A+ I +
Sbjct: 24 DDKTIQGKIEKVLHQMTNEEI-EIIGSGRTDAGTHARGQVANF---KTNTEIGLAEMIDF 79
Query: 321 QMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
MN+ + +++K+ + + F++R+ A+ + Y Y
Sbjct: 80 -MNRYL---PRDIVIKRIEEMPERFHSRYNAVGKKYSY 113
>UniRef50_Q00RV7 Cluster: TRUA1_PARUW tRNA pseudouridine synthase A
1; n=2; Ostreococcus|Rep: TRUA1_PARUW tRNA pseudouridine
synthase A 1 - Ostreococcus tauri
Length = 705
Score = 40.7 bits (91), Expect = 0.014
Identities = 35/104 (33%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Frame = +3
Query: 129 RDYPDPESVQGLMEIALLKLRSLNYPKVVL--SSRTDGGVHALNSSAHFDLEKYGTEIYD 302
R D SVQ +E L +L + L S RTDGGVHA HF EK D
Sbjct: 33 RQGADVASVQRELERCLTRLTGEGRDALRLGGSGRTDGGVHARGQVVHFYSEKDWRSAED 92
Query: 303 ADNITYQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
MN + V ++ R + F+ARF A +TY Y
Sbjct: 93 FARCVKAMNGML---PRDVRCERFWRPHPAFHARFHATRKTYAY 133
>UniRef50_A1A6J3 Cluster: Pseudouridylate synthase; n=9;
Magnoliophyta|Rep: Pseudouridylate synthase -
Arabidopsis thaliana (Mouse-ear cress)
Length = 323
Score = 40.7 bits (91), Expect = 0.014
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Frame = +3
Query: 144 PESVQGLMEIALLKLRSLNYPKVVL--SSRTDGGVHALNSSAHFDLEKYGTEIYDADNIT 317
P ++Q ++E AL+++ L ++ L + RTD GVHA AHF T + D+
Sbjct: 63 PPTIQSMLEKALIQITELGRKELQLIGAGRTDAGVHAWGQVAHFVTPFNYTSL---DSFH 119
Query: 318 YQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYR 437
+N K + V++ +F+ARF+A + Y Y+
Sbjct: 120 AALNGLL---PKDIRVRELSAAVPEFHARFSASSKVYRYQ 156
>UniRef50_Q74L59 Cluster: tRNA pseudouridine synthase A; n=18;
Bacilli|Rep: tRNA pseudouridine synthase A -
Lactobacillus johnsonii
Length = 263
Score = 40.7 bits (91), Expect = 0.014
Identities = 33/99 (33%), Positives = 50/99 (50%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNIT 317
P+ +VQG++E AL K+ V S RTD GVHA HFD G EI A N+
Sbjct: 23 PNQRTVQGVIEEALKKMTKGKRVVVHGSGRTDAGVHAKGQVIHFDYP--GKEI-PAKNMM 79
Query: 318 YQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
+N + +V + I V++DF+ +++ + Y Y
Sbjct: 80 LALNALMPID--TVFFESEI-VDEDFHVQYSTKGKWYRY 115
>UniRef50_Q5NG36 Cluster: tRNA pseudouridine synthase A; n=11;
Francisella tularensis|Rep: tRNA pseudouridine synthase
A - Francisella tularensis subsp. tularensis
Length = 258
Score = 40.7 bits (91), Expect = 0.014
Identities = 33/95 (34%), Positives = 49/95 (51%)
Frame = +3
Query: 150 SVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMN 329
SVQ +E AL K+ + N +V + RTD GVHA + +F Y +N
Sbjct: 26 SVQEELEKALSKIANQNI-EVTCAGRTDTGVHATSQIVNF----YSNADRPLSAWQRGVN 80
Query: 330 KSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
+ K + V++ V+++FN+RFTAI RTY Y
Sbjct: 81 ALLPQDIKILAVQQ---VDNNFNSRFTAINRTYNY 112
>UniRef50_Q2S4S9 Cluster: Pseudouridylate synthase; n=1;
Salinibacter ruber DSM 13855|Rep: Pseudouridylate
synthase - Salinibacter ruber (strain DSM 13855)
Length = 265
Score = 40.3 bits (90), Expect = 0.019
Identities = 34/99 (34%), Positives = 46/99 (46%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNIT 317
P +VQG +E A+ + +V S RTD GVHA AH DL E D +
Sbjct: 22 PTVPTVQGALEEAVDTVVGTAC-RVTGSGRTDAGVHARGQVAHVDL----PETRDPYRLR 76
Query: 318 YQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
+N +V V++ R DDF+AR+ A R Y Y
Sbjct: 77 GSLN---GLTPDAVAVRRVERAPDDFHARYDARRRRYHY 112
>UniRef50_O83802 Cluster: tRNA pseudouridine synthase A; n=1;
Treponema pallidum|Rep: tRNA pseudouridine synthase A -
Treponema pallidum
Length = 280
Score = 40.3 bits (90), Expect = 0.019
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Frame = +3
Query: 150 SVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMN 329
SVQG +E K+ V+ S RTD GVHA+ +AHF + + Y+
Sbjct: 34 SVQGELEKVAEKIHHQKIA-VIGSGRTDSGVHAVGQAAHFCTPM-------RNILAYRFI 85
Query: 330 KSYHS-NNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
+++S S+ + V+ +ARF+A+ RTY Y
Sbjct: 86 PAFNSLLPHSIRITDAREVSSQLHARFSAVMRTYRY 121
>UniRef50_Q6MQH6 Cluster: tRNA pseudouridine synthase A; n=1;
Bdellovibrio bacteriovorus|Rep: tRNA pseudouridine
synthase A - Bdellovibrio bacteriovorus
Length = 262
Score = 40.3 bits (90), Expect = 0.019
Identities = 31/98 (31%), Positives = 47/98 (47%)
Frame = +3
Query: 141 DPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITY 320
D SV ++E AL K+ + + S RTD GVHALN HF + + ++ +
Sbjct: 26 DQISVAQVIEEALSKVFNEKIT-LFASGRTDAGVHALNQVCHFSTHR-KIDPNKKWDLCW 83
Query: 321 QMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
+N S++ KK DDF+A +A +TY Y
Sbjct: 84 ALNSHL---PPSIVAKKAWIAPDDFHATLSATHKTYRY 118
>UniRef50_Q2LUS6 Cluster: Pseudouridylate synthase; n=1; Syntrophus
aciditrophicus SB|Rep: Pseudouridylate synthase -
Syntrophus aciditrophicus (strain SB)
Length = 259
Score = 39.9 bits (89), Expect = 0.025
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 219 SSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMNKSYHSNNKSVLVKKCIRVNDDFN 398
S RTD GVHALN A+F + + I A N+ +N + +++++ V+++F+
Sbjct: 62 SGRTDAGVHALNQVANF---RTSSRI-PAANLLRGLNSLLPGD---IVIRETEDVDEEFH 114
Query: 399 ARFTAIPRTYLYR 437
+R++A ++YLYR
Sbjct: 115 SRYSAKSKSYLYR 127
>UniRef50_Q8CY46 Cluster: tRNA pseudouridine synthase A; n=3;
Bifidobacterium|Rep: tRNA pseudouridine synthase A -
Bifidobacterium longum
Length = 303
Score = 39.9 bits (89), Expect = 0.025
Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 13/115 (11%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYP------KVVLSSRTDGGVHALNSSAHFDLEKYGTEIY 299
P+ +VQG +E AL K+ + ++ ++ RTD GVHA + AH D+ E+
Sbjct: 22 PNLRTVQGTIEDALHKVLRVPTDDAAEPLRLTVAGRTDTGVHASHQVAHLDVSD---EVL 78
Query: 300 D--ADNITYQMNKSYHSNNKSVL----VKKCIRVND-DFNARFTAIPRTYLYRFA 443
+ ++T + ++ K+VL V I V F+ARF+A+ RTY+YR A
Sbjct: 79 NRCVGHMTIPVTEALTRRLKAVLPSDIVIHGIAVAPVGFDARFSALERTYVYRVA 133
>UniRef50_Q1N6P3 Cluster: Pseudouridylate synthase; n=2;
Gammaproteobacteria|Rep: Pseudouridylate synthase -
Oceanobacter sp. RED65
Length = 297
Score = 39.5 bits (88), Expect = 0.032
Identities = 35/109 (32%), Positives = 51/109 (46%)
Frame = +3
Query: 108 KIWLKDGRDYPDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYG 287
K W K + Y P SVQ +E A+ ++ + + VV + RTD GVHA HFD
Sbjct: 43 KGWQKQ-KHYAGP-SVQEALEKAISRVAN-HTVDVVCAGRTDAGVHASAQVIHFDT---- 95
Query: 288 TEIYDADNITYQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
+ + D +N + V V + DF+ARF+A+ R Y Y
Sbjct: 96 SAVRDERAWKLGINTNLPD---GVCVNWIMPAPQDFHARFSAVARRYRY 141
>UniRef50_Q8D2P5 Cluster: tRNA pseudouridine synthase A; n=1;
Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis|Rep: tRNA pseudouridine synthase A -
Wigglesworthia glossinidia brevipalpis
Length = 264
Score = 39.5 bits (88), Expect = 0.032
Identities = 32/95 (33%), Positives = 50/95 (52%)
Frame = +3
Query: 150 SVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMN 329
S+Q +E+AL K K+ + RTD VHAL HF Y T+I +
Sbjct: 26 SIQEYVELALFKFSGEKI-KIYCAGRTDAKVHALLQVVHF----Y-TDIKRSYRQWILGV 79
Query: 330 KSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
SY + S++ I+V+++F+AR++AI + YLY
Sbjct: 80 NSYLPYDISIMW--VIKVHNNFHARYSAIAKKYLY 112
>UniRef50_Q8R7Y7 Cluster: tRNA pseudouridine synthase A; n=9;
Clostridia|Rep: tRNA pseudouridine synthase A -
Thermoanaerobacter tengcongensis
Length = 240
Score = 39.1 bits (87), Expect = 0.043
Identities = 32/95 (33%), Positives = 51/95 (53%)
Frame = +3
Query: 150 SVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMN 329
+VQ ++E A+ K+ ++ SSRTD GVHAL A+F K T+I + + Y +N
Sbjct: 22 TVQEVLEKAIEKVTGEKV-NLIGSSRTDTGVHALYQVANF---KTKTKI-PPEKLPYALN 76
Query: 330 KSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
+ V+V K V+ F+AR++A + Y Y
Sbjct: 77 AVLPDD---VVVVKAKEVDKSFHARYSARSKRYRY 108
>UniRef50_Q6MEE7 Cluster: tRNA pseudouridine synthase A 1; n=1;
Candidatus Protochlamydia amoebophila UWE25|Rep: tRNA
pseudouridine synthase A 1 - Protochlamydia amoebophila
(strain UWE25)
Length = 256
Score = 39.1 bits (87), Expect = 0.043
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYPKVVL--SSRTDGGVHALNSSAHFDLEKYGTEIYDADN 311
P+ S+Q ++ AL L L KVVL S RTD GVHA AHF + Y D
Sbjct: 22 PNASSIQQKIQEALCIL--LKKEKVVLVGSGRTDAGVHAKGQVAHFHFQDY----IDLSR 75
Query: 312 ITYQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
+ +N + + +K V+ F+++++AI + Y Y
Sbjct: 76 LHVSLNGLL---PRDIRIKAVEPVSPRFHSQYSAIRKEYHY 113
>UniRef50_Q1AU61 Cluster: Pseudouridylate synthase; n=1; Rubrobacter
xylanophilus DSM 9941|Rep: Pseudouridylate synthase -
Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)
Length = 257
Score = 38.7 bits (86), Expect = 0.057
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYP-KVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNI 314
P +V+G + AL + L +P ++ + RTD GVHA FD GT D +
Sbjct: 21 PGRRTVEGELSRALETV--LRHPVRLTAAGRTDAGVHASGQVVSFDARD-GT---DPGTL 74
Query: 315 TYQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYR 437
Y+ + ++ V +++C+ F+AR A R+Y YR
Sbjct: 75 AYKASAVL---SEDVALRRCVAAPPGFDARRDAASRSYEYR 112
>UniRef50_A4BHD0 Cluster: Pseudouridylate synthase; n=1; Reinekea
sp. MED297|Rep: Pseudouridylate synthase - Reinekea sp.
MED297
Length = 286
Score = 38.7 bits (86), Expect = 0.057
Identities = 27/95 (28%), Positives = 45/95 (47%)
Frame = +3
Query: 150 SVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMN 329
++Q +E A+ K+ +V + RTD GVHA N HFD ++ I ++
Sbjct: 39 TIQAALEAAIAKVADEPVSTIV-AGRTDAGVHATNQIVHFDTRAQRSDYGWKMGINGRL- 96
Query: 330 KSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
+ VK +V++ F+ARF+A R Y +
Sbjct: 97 ------PDDISVKWVTQVDEHFHARFSAQERAYRF 125
>UniRef50_Q88XU9 Cluster: tRNA pseudouridine synthase A; n=10;
Lactobacillales|Rep: tRNA pseudouridine synthase A -
Lactobacillus plantarum
Length = 262
Score = 38.3 bits (85), Expect = 0.075
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYPKVVL--SSRTDGGVHALNSSAHFDLEKYGTEIYDADN 311
P +V+ ++ A+ K+ +V+ + RTD GVHA + HFDL EI + +
Sbjct: 23 PHQRTVEQVVTKAVNKMAKDPVEPIVIYGAGRTDAGVHAFGQTLHFDLP---YEI-NPEG 78
Query: 312 ITYQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYR 437
+ +N + +VK V +DF+AR+ + + Y YR
Sbjct: 79 VRRGLNSMLPMD---TIVKAVSIVPNDFHARYDTVGKRYWYR 117
>UniRef50_Q47HQ7 Cluster: Pseudouridylate synthase; n=1;
Dechloromonas aromatica RCB|Rep: Pseudouridylate
synthase - Dechloromonas aromatica (strain RCB)
Length = 262
Score = 37.9 bits (84), Expect = 0.099
Identities = 31/95 (32%), Positives = 46/95 (48%)
Frame = +3
Query: 150 SVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMN 329
+VQ +E AL ++ + V+ + RTD GVHA + AHFD D +
Sbjct: 25 TVQDALEAALGEVAGVPVG-VLCAGRTDAGVHATHQVAHFDAP------VDRPLTAWVRG 77
Query: 330 KSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
+ H + V V+ V +DF+ARF+A R Y Y
Sbjct: 78 VNSHL-PEGVAVRWAQPVAEDFHARFSARGRRYRY 111
>UniRef50_A5VF15 Cluster: Glycosyl transferase, family 2; n=1;
Sphingomonas wittichii RW1|Rep: Glycosyl transferase,
family 2 - Sphingomonas wittichii RW1
Length = 332
Score = 37.9 bits (84), Expect = 0.099
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +3
Query: 102 SEKIWLKDGRDYPDPESVQGLMEI-ALLKLRSLNYPKVVLSSRTDGGV 242
++ IW+ D PDP++++ L++ LL+ R ++ P VV ++RT GG+
Sbjct: 91 ADGIWVMDDDVIPDPDALEKLLDADRLLRAREIDPPFVVSTARTPGGI 138
>UniRef50_Q73KE3 Cluster: tRNA pseudouridine synthase A; n=1;
Treponema denticola|Rep: tRNA pseudouridine synthase A -
Treponema denticola
Length = 268
Score = 37.9 bits (84), Expect = 0.099
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Frame = +3
Query: 114 WLKDGRDYPDP-ESVQGLMEIALLKLRSLNYP-KVVLSSRTDGGVHALNSSAHFDLEKYG 287
W K ++ + +VQG +E AL K+ +P + S RTD GVHA + +F +
Sbjct: 24 WQKQTKEGAETFRTVQGELEKALTKIHK--HPIETNGSGRTDSGVHAARQAVNFFCD--- 78
Query: 288 TEIYDADNITYQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYR 437
+ A N +N K + V V+ +ARF A+ RTY Y+
Sbjct: 79 IKSMRASNFLPALNSILP---KDIRVMDAAEVSPLLHARFNALSRTYRYK 125
>UniRef50_Q7NAQ9 Cluster: tRNA pseudouridine synthase A; n=1;
Mycoplasma gallisepticum|Rep: tRNA pseudouridine
synthase A - Mycoplasma gallisepticum
Length = 262
Score = 37.5 bits (83), Expect = 0.13
Identities = 32/98 (32%), Positives = 49/98 (50%)
Frame = +3
Query: 141 DPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITY 320
D E+VQ ++ AL + V S RTD GVHA+N F Y + + +
Sbjct: 43 DYETVQSKLQDALAWIYESKI-YVNASGRTDKGVHAINQYISF----YIDDRISLEKLRE 97
Query: 321 QMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
+N+ + NK +K V+ +F+ARF+A +TYLY
Sbjct: 98 ILNR--YGQNKWY-IKWIKEVDRNFHARFSAKAKTYLY 132
>UniRef50_Q6ANM1 Cluster: tRNA pseudouridine synthase A 1; n=1;
Desulfotalea psychrophila|Rep: tRNA pseudouridine
synthase A 1 - Desulfotalea psychrophila
Length = 251
Score = 37.5 bits (83), Expect = 0.13
Identities = 30/96 (31%), Positives = 49/96 (51%)
Frame = +3
Query: 150 SVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMN 329
++QG +E A LK S+ + + RTD GVHA +AHF + T ++ +N
Sbjct: 26 TIQGEIE-ARLKRLSVKEISLHGAGRTDAGVHADGMTAHFHTDTRLT----CNDFQRALN 80
Query: 330 KSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYR 437
+ + + V++ + DDF+ARF A + Y YR
Sbjct: 81 RMLPGAIRILQVRE---MADDFHARFAATGKEYHYR 113
>UniRef50_A5D5F5 Cluster: Pseudouridylate synthase; n=2;
Clostridia|Rep: Pseudouridylate synthase - Pelotomaculum
thermopropionicum SI
Length = 273
Score = 37.1 bits (82), Expect = 0.17
Identities = 26/95 (27%), Positives = 46/95 (48%)
Frame = +3
Query: 150 SVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMN 329
+VQ ++E L +L +V+ + RTD GVHA +F+ G + + Y +N
Sbjct: 53 TVQEVIEERLSRLAGEQI-RVIGAGRTDAGVHARGQVINFNP---GNWPIPPERVAYALN 108
Query: 330 KSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
+ + + + V F+ARF+A+ +TY Y
Sbjct: 109 SLLP---RDIAALESVEVPPSFHARFSAVAKTYRY 140
>UniRef50_A1HQP5 Cluster: Pseudouridylate synthase; n=1; Thermosinus
carboxydivorans Nor1|Rep: Pseudouridylate synthase -
Thermosinus carboxydivorans Nor1
Length = 250
Score = 36.3 bits (80), Expect = 0.30
Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Frame = +3
Query: 150 SVQGLMEIALLKLRSLNYP-KVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQM 326
+VQ ++E L + +P KV ++RTD GVHA F GT A NI +
Sbjct: 32 TVQQVLEERLATI--FGHPLKVTGAARTDAGVHAYGQVVGFATS--GT--IPAANIV-RA 84
Query: 327 NKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYR 437
KS + ++V K V+ DF+ARF+A + YLYR
Sbjct: 85 AKSVLPPD--IVVVKAEEVSADFHARFSARSKIYLYR 119
>UniRef50_Q4Q7E9 Cluster: Pseudouridylate synthase; n=5;
Trypanosomatidae|Rep: Pseudouridylate synthase -
Leishmania major
Length = 498
Score = 36.3 bits (80), Expect = 0.30
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Frame = +3
Query: 150 SVQGLMEIALLKLRSL--NYP-KVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITY 320
+V+GL+ AL +LR + + P RTD GV AL ++ F L + DA+
Sbjct: 85 TVEGLVCDALRRLRLIPEDGPHNFGRCGRTDKGVSALGNA--FSLTARASCTGDAEPQLP 142
Query: 321 QMNKSYHSNN---KSVLVKKCIRVNDDFNARFTAIPRTYLYRF 440
++ NN ++ + C V+D F+ARF+ + RTY Y F
Sbjct: 143 PLDYCSMLNNVLPSTIRIVGCALVDDAFDARFSCVHRTYRYYF 185
>UniRef50_Q8XLQ0 Cluster: tRNA pseudouridine synthase A 1; n=4;
Clostridium|Rep: tRNA pseudouridine synthase A 1 -
Clostridium perfringens
Length = 248
Score = 36.3 bits (80), Expect = 0.30
Identities = 31/112 (27%), Positives = 50/112 (44%)
Frame = +3
Query: 99 SSEKIWLKDGRDYPDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLE 278
S K W K + + +VQ +E L K+ S +++ RTD GVHA N A+F
Sbjct: 13 SKYKGWQKQNQKGSNVSTVQDKLEKVLTKMTSEEI-QLIGCGRTDSGVHAKNYVANFKTN 71
Query: 279 KYGTEIYDADNITYQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
T + I +N+ + + V + ++ F+ARF +TY Y
Sbjct: 72 SLMT----LEQIIEYINEYL---PEDIRVTEIREASERFHARFNVKSKTYEY 116
>UniRef50_Q4EAG2 Cluster: TRNA pseudouridine synthase A; n=1;
Wolbachia endosymbiont of Drosophila ananassae|Rep: TRNA
pseudouridine synthase A - Wolbachia endosymbiont of
Drosophila ananassae
Length = 100
Score = 35.9 bits (79), Expect = 0.40
Identities = 19/35 (54%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +3
Query: 225 RTDGGVHALNSSAHFDLEKYGTEIYDADN-ITYQM 326
RTD GVHAL AHFD+EK E+Y N I Y +
Sbjct: 50 RTDAGVHALGQVAHFDMEK-ECELYRIRNAINYHL 83
>UniRef50_Q4AHD2 Cluster: TRNA pseudouridine synthase; n=1;
Chlorobium phaeobacteroides BS1|Rep: TRNA pseudouridine
synthase - Chlorobium phaeobacteroides BS1
Length = 240
Score = 35.9 bits (79), Expect = 0.40
Identities = 25/75 (33%), Positives = 38/75 (50%)
Frame = +3
Query: 210 VVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMNKSYHSNNKSVLVKKCIRVND 389
VV RTD GVHA AH D+ + + D + Y++N+ + ++V V
Sbjct: 50 VVGCGRTDTGVHARAFYAHIDIPAIESNLND---LVYKLNRFLPDD---LVVYFIQEVPH 103
Query: 390 DFNARFTAIPRTYLY 434
D ++RF+A RTY Y
Sbjct: 104 DLHSRFSANSRTYKY 118
>UniRef50_A4CM73 Cluster: Pseudouridylate synthase; n=1;
Robiginitalea biformata HTCC2501|Rep: Pseudouridylate
synthase - Robiginitalea biformata HTCC2501
Length = 253
Score = 35.9 bits (79), Expect = 0.40
Identities = 29/99 (29%), Positives = 46/99 (46%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNIT 317
P+ ++Q ++E + KL +V + RTD GVHA AHFD +
Sbjct: 21 PNALAIQEILEDRMGKLLGNGPIDLVGAGRTDAGVHARQLFAHFD-----RDAALPSGFV 75
Query: 318 YQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
+++N ++ + VK V + +ARF A RTY Y
Sbjct: 76 HRLNAFLPAD---IAVKGVYEVAPNAHARFDATGRTYEY 111
>UniRef50_P60351 Cluster: tRNA pseudouridine synthase A; n=2;
Candidatus Phytoplasma asteris|Rep: tRNA pseudouridine
synthase A - Onion yellows phytoplasma
Length = 243
Score = 35.9 bits (79), Expect = 0.40
Identities = 27/102 (26%), Positives = 45/102 (44%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNIT 317
P +VQ E AL K+ N P +SRTD GVH+ + HF + + +
Sbjct: 24 PQKITVQQTFEKALKKMTHQNIPTFA-ASRTDKGVHSQGQTLHFQTTFFLKPTHFQKTLN 82
Query: 318 YQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYRFA 443
Y + + V++ +F+AR++A + Y Y F+
Sbjct: 83 YLL-------PPDIRVRQMNFATPNFHARYSAKSKIYQYVFS 117
>UniRef50_Q6I4Q2 Cluster: tRNA pseudouridine synthase A 1; n=14;
Bacillaceae|Rep: tRNA pseudouridine synthase A 1 -
Bacillus anthracis
Length = 247
Score = 35.9 bits (79), Expect = 0.40
Identities = 29/103 (28%), Positives = 43/103 (41%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNIT 317
P +VQ +E AL KL +V S RTD VHA HFD E + N
Sbjct: 22 PQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKGQVIHFD-TPLSLEEWQWSNAL 80
Query: 318 YQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYRFAV 446
M +++ + + ++F+AR+ + Y YR V
Sbjct: 81 NTMLPD------DIVITQVEKKTEEFHARYGVERKEYRYRVLV 117
>UniRef50_A6TWE8 Cluster: Pseudouridylate synthase; n=4;
Clostridia|Rep: Pseudouridylate synthase - Alkaliphilus
metalliredigens QYMF
Length = 255
Score = 35.5 bits (78), Expect = 0.53
Identities = 22/72 (30%), Positives = 36/72 (50%)
Frame = +3
Query: 219 SSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMNKSYHSNNKSVLVKKCIRVNDDFN 398
S RTD GVHA A F L A+ I++ +N + + + + + +DF+
Sbjct: 48 SGRTDAGVHAQGQVASFQLHSK----IPAERISFALNGKL---PRDITILEAKEMPEDFH 100
Query: 399 ARFTAIPRTYLY 434
AR++AI + Y Y
Sbjct: 101 ARYSAIGKRYGY 112
>UniRef50_A5USG0 Cluster: Pseudouridylate synthase; n=3;
Chloroflexaceae|Rep: Pseudouridylate synthase -
Roseiflexus sp. RS-1
Length = 270
Score = 35.5 bits (78), Expect = 0.53
Identities = 30/95 (31%), Positives = 44/95 (46%)
Frame = +3
Query: 150 SVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMN 329
SVQG++E A +L ++ L+ RTD GVHA A+ + T I +N
Sbjct: 26 SVQGVLEAAWQQLTG-ERRRMTLAGRTDAGVHARGQVANVRTDTRHT----ISTIVRGLN 80
Query: 330 KSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
+ V V DDF+AR++A+ R Y Y
Sbjct: 81 GILPED---VGVLAAWEAPDDFHARYSAVRREYRY 112
>UniRef50_Q4ALX6 Cluster: Pseudouridylate synthase; n=1; Chlorobium
phaeobacteroides BS1|Rep: Pseudouridylate synthase -
Chlorobium phaeobacteroides BS1
Length = 233
Score = 35.1 bits (77), Expect = 0.70
Identities = 27/97 (27%), Positives = 45/97 (46%)
Frame = +3
Query: 150 SVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMN 329
+VQG++E L ++ + + RTD GVHA A+F + + +N
Sbjct: 22 TVQGVLETTLSRIVQEEVV-MTAAGRTDRGVHARGQVANFRT----ASCLSTGRLLHSLN 76
Query: 330 KSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYRF 440
S +V ++ V D F+AR++A+ R Y Y F
Sbjct: 77 ALLPS---TVCIRDMQEVPDSFHARYSALFREYRYFF 110
>UniRef50_A6NVS7 Cluster: Pseudouridylate synthase; n=1; Bacteroides
capillosus ATCC 29799|Rep: Pseudouridylate synthase -
Bacteroides capillosus ATCC 29799
Length = 249
Score = 35.1 bits (77), Expect = 0.70
Identities = 24/73 (32%), Positives = 34/73 (46%)
Frame = +3
Query: 219 SSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMNKSYHSNNKSVLVKKCIRVNDDFN 398
+ RTD GVHA N A+F T D + +N + ++V K V+D FN
Sbjct: 48 AGRTDAGVHAENYIANFRT----TSTIPCDRLPLAVNTRLPED---IVVVKATEVHDGFN 100
Query: 399 ARFTAIPRTYLYR 437
A + I + Y YR
Sbjct: 101 AIGSCIKKEYTYR 113
>UniRef50_A5WGT0 Cluster: Pseudouridylate synthase; n=4;
Moraxellaceae|Rep: Pseudouridylate synthase -
Psychrobacter sp. PRwf-1
Length = 302
Score = 35.1 bits (77), Expect = 0.70
Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Frame = +3
Query: 153 VQGLMEIALLKLRSLNYP-KVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMN 329
VQ ++E L K+ N P +VV + RTD GVH N AHF A Y
Sbjct: 62 VQQVLEETLSKIA--NEPIEVVAAGRTDAGVHGGNMLAHFTT--------SAKRGVYNWL 111
Query: 330 KSYHSNNKSVLVKKCIR-VNDDFNARFTAIPRTYLY 434
+ +S + + I+ + D F+ARF AI R Y Y
Sbjct: 112 RGANSLLPDDIAIRWIQPMPDTFHARFGAIARRYRY 147
>UniRef50_A5KIY9 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus torques ATCC 27756|Rep: Putative
uncharacterized protein - Ruminococcus torques ATCC
27756
Length = 221
Score = 35.1 bits (77), Expect = 0.70
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = +3
Query: 222 SRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMNKSYHSNNKSVLVKKCIRVNDDFNA 401
++T GVHAL + +F E ++ Y + + K H + + V+D F +
Sbjct: 52 AKTAPGVHALCQTVNFHTESPFSDTYFLSKLNEYLPKDIHILSSEI-------VSDRFRS 104
Query: 402 RFTAIPRTYLYR 437
A+ RTYLYR
Sbjct: 105 DLNAVSRTYLYR 116
>UniRef50_Q7TU31 Cluster: tRNA pseudouridine synthase A; n=5;
Prochlorococcus marinus|Rep: tRNA pseudouridine synthase
A - Prochlorococcus marinus subsp. pastoris (strain CCMP
1378 / MED4)
Length = 268
Score = 35.1 bits (77), Expect = 0.70
Identities = 27/95 (28%), Positives = 43/95 (45%)
Frame = +3
Query: 150 SVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMN 329
SVQ +E L K+ S K S RTD GVHA HFD++ + D +N
Sbjct: 26 SVQETIENCLFKI-SNQIIKTFASGRTDAGVHASGQVIHFDID----FLIPIDRYADVLN 80
Query: 330 KSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
++ + + + V ++A ++A+ R Y Y
Sbjct: 81 SRL---PHTIRILESVEVKSSWHACYSAVYRHYRY 112
>UniRef50_Q8R601 Cluster: tRNA pseudouridine synthase A; n=3;
Fusobacterium nucleatum|Rep: tRNA pseudouridine synthase
A - Fusobacterium nucleatum subsp. nucleatum
Length = 247
Score = 35.1 bits (77), Expect = 0.70
Identities = 26/99 (26%), Positives = 53/99 (53%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNIT 317
P+ +VQG +E +L++ + ++ + RTD GVHA + ++F Y + +
Sbjct: 26 PNKITVQGEIE-KVLRIVTKEEINLISAGRTDRGVHANHQVSNF----YTSSNIPIEKYK 80
Query: 318 YQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
Y + ++ ++ + V++ V+++FNAR A R Y+Y
Sbjct: 81 YLLTRALPNDIDILSVEE---VDENFNARHNAKMREYIY 116
>UniRef50_Q0LPW8 Cluster: Pseudouridylate synthase; n=1;
Herpetosiphon aurantiacus ATCC 23779|Rep:
Pseudouridylate synthase - Herpetosiphon aurantiacus
ATCC 23779
Length = 272
Score = 34.7 bits (76), Expect = 0.92
Identities = 31/101 (30%), Positives = 43/101 (42%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNIT 317
P +VQ +E A +L S + + + RTD GVHAL AH D I
Sbjct: 23 PGGRAVQTELETAWQRLTS-ETGRWIFAGRTDAGVHALAQVAHI----VSDTPRSLDTIA 77
Query: 318 YQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYRF 440
+N + V + + F+ARF+A RTY Y F
Sbjct: 78 KAINA---ITPPDISVHEAWEMPTGFHARFSARQRTYRYVF 115
>UniRef50_A0YB03 Cluster: Pseudouridylate synthase; n=10;
Gammaproteobacteria|Rep: Pseudouridylate synthase -
marine gamma proteobacterium HTCC2143
Length = 288
Score = 34.7 bits (76), Expect = 0.92
Identities = 30/99 (30%), Positives = 43/99 (43%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNIT 317
P +VQ +E AL + + N V + RTD GVHA + HFD A
Sbjct: 48 PQVATVQETLEKALSSVANANVI-VQCAGRTDTGVHASHQIVHFDSP-------SARGEK 99
Query: 318 YQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
+ + S+ ++ V+ FNARF+A R Y Y
Sbjct: 100 AWVRGGNTNLPSSIAIQWAKPVSAKFNARFSATARRYRY 138
>UniRef50_Q890R5 Cluster: tRNA pseudouridine synthase A 2; n=11;
Clostridium|Rep: tRNA pseudouridine synthase A 2 -
Clostridium tetani
Length = 248
Score = 34.7 bits (76), Expect = 0.92
Identities = 21/77 (27%), Positives = 41/77 (53%)
Frame = +3
Query: 207 KVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMNKSYHSNNKSVLVKKCIRVN 386
+++ SSRTD GVHAL +A+F + + +N+ + +++ + V
Sbjct: 47 ELIGSSRTDAGVHALAYTANFKT----CSTIPGEKFKHALNRFL---PEDIVILESEEVP 99
Query: 387 DDFNARFTAIPRTYLYR 437
+F++RF I +TY+Y+
Sbjct: 100 MEFHSRFDCIGKTYVYK 116
>UniRef50_A6EHK7 Cluster: Pseudouridylate synthase; n=1; Pedobacter
sp. BAL39|Rep: Pseudouridylate synthase - Pedobacter sp.
BAL39
Length = 283
Score = 34.3 bits (75), Expect = 1.2
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = +3
Query: 225 RTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMNKSYHSNNKSVLVKKCIRVNDDFNAR 404
RTD GVHA HFDL D +N + + + + V+++ +AR
Sbjct: 83 RTDTGVHATQFFVHFDLPAETASTLDPGRAVTGINSLL---SYQIAIGRIFAVDNEAHAR 139
Query: 405 FTAIPRTYLY 434
F A R Y Y
Sbjct: 140 FGATARAYHY 149
>UniRef50_A3ZQX0 Cluster: Pseudouridylate synthase; n=2;
Bacteria|Rep: Pseudouridylate synthase - Blastopirellula
marina DSM 3645
Length = 260
Score = 34.3 bits (75), Expect = 1.2
Identities = 27/98 (27%), Positives = 43/98 (43%)
Frame = +3
Query: 141 DPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITY 320
D ++QG +E LLK+ +V S RTD GVHA+ F ++ D +
Sbjct: 28 DQRTIQGALERTLLKITGEKI-RVTGSGRTDSGVHAIGQVVSFRMQSQ----LSPDVMRR 82
Query: 321 QMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
+N + ++V+ +FNA AI + Y Y
Sbjct: 83 ALNAELPPD---IVVQSARNAIPEFNAIDCAIKKRYRY 117
>UniRef50_Q8SQS9 Cluster: TRNA PSEUDOURIDINE SYNTHASE A; n=1;
Encephalitozoon cuniculi|Rep: TRNA PSEUDOURIDINE
SYNTHASE A - Encephalitozoon cuniculi
Length = 339
Score = 34.3 bits (75), Expect = 1.2
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Frame = +3
Query: 147 ESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSA------HFDLEKYGTEIYDAD 308
E++ G +E AL R K+V + RTD GV A+ A ++ + + D
Sbjct: 82 ETIGGYLEYALKSTRLGE--KLVYAGRTDAGVSAIGMIASGVLTSRIEMPNRSYAVAEDD 139
Query: 309 NITYQMNKSYHSN-NKSVLVKKCIRVNDDFNARFTAIPRTYLYRF 440
Y+ + +++ + V V D F+ARFT I R Y Y F
Sbjct: 140 YKEYKYDVMLNNHLPPDIRVVGWAPVPDTFSARFTCIQRQYRYYF 184
>UniRef50_Q8CWM6 Cluster: tRNA pseudouridine synthase A; n=1;
Synechococcus elongatus|Rep: tRNA pseudouridine synthase
A - Synechococcus elongatus (Thermosynechococcus
elongatus)
Length = 284
Score = 34.3 bits (75), Expect = 1.2
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Frame = +3
Query: 150 SVQGLMEIALLKLRSLNYP-KVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQM 326
+VQ ++E A+ + +N+P VV + RTD GVHA AH + ++ I +
Sbjct: 36 TVQEVIEQAIASV--VNHPVSVVAAGRTDTGVHAAGQVAHVTVNS-PIPVHRWPGI---L 89
Query: 327 NKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
N ++ V+++ V D++ARF+A+ R Y Y
Sbjct: 90 NARLPAD---VVIRAAAAVPPDWHARFSALWRRYRY 122
>UniRef50_Q1IRQ4 Cluster: Pseudouridylate synthase; n=2;
Acidobacteria|Rep: Pseudouridylate synthase -
Acidobacteria bacterium (strain Ellin345)
Length = 257
Score = 33.9 bits (74), Expect = 1.6
Identities = 26/73 (35%), Positives = 37/73 (50%)
Frame = +3
Query: 219 SSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMNKSYHSNNKSVLVKKCIRVNDDFN 398
S RTD GVHAL A L+ T I AD + +N + +++ V + DF+
Sbjct: 49 SGRTDAGVHALGQVASVALQ---TPI-PADGLHIALNDKLPPSIRALTVGEAA---PDFH 101
Query: 399 ARFTAIPRTYLYR 437
AR +A +TY YR
Sbjct: 102 ARHSAKGKTYRYR 114
>UniRef50_Q0AUL4 Cluster: Pseudouridylate synthase; n=1;
Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
Pseudouridylate synthase - Syntrophomonas wolfei subsp.
wolfei (strain Goettingen)
Length = 249
Score = 33.9 bits (74), Expect = 1.6
Identities = 27/95 (28%), Positives = 40/95 (42%)
Frame = +3
Query: 150 SVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMN 329
+VQ +E A+ +L S +V + RTD GVHA FD D Y +N
Sbjct: 26 TVQAELEKAIYRL-SGERATIVCAGRTDAGVHAWGQVVAFD----SCSTIPGDRWAYALN 80
Query: 330 KSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
+ + V + +FN RF A+ + Y Y
Sbjct: 81 SQL---PEDIQVLESQETRAEFNPRFDALKKCYGY 112
>UniRef50_A6BIC3 Cluster: Pseudouridylate synthase; n=1; Dorea
longicatena DSM 13814|Rep: Pseudouridylate synthase -
Dorea longicatena DSM 13814
Length = 245
Score = 33.9 bits (74), Expect = 1.6
Identities = 28/111 (25%), Positives = 50/111 (45%)
Frame = +3
Query: 114 WLKDGRDYPDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTE 293
W + G+D + E+ L K+ + ++ RT+ GVHA A+F T
Sbjct: 18 WTRLGKDESGNTISNKITEV-LKKMTEEDDLELFCGCRTEVGVHAYAQIANFKTSSSTT- 75
Query: 294 IYDADNITYQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYRFAV 446
NI + +N+ + + VK+ V + F+A+ A +TY+YR +
Sbjct: 76 ---TQNIKHYLNRYLPMDIAIIDVKE---VPERFHAQLNATSKTYVYRMTI 120
>UniRef50_A5N006 Cluster: Predicted transporter protein; n=1;
Clostridium kluyveri DSM 555|Rep: Predicted transporter
protein - Clostridium kluyveri DSM 555
Length = 275
Score = 33.9 bits (74), Expect = 1.6
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 1/134 (0%)
Frame = -3
Query: 440 KSV*ISPRNSCKPSIKVIIHSDTF-LYQNTFIITVIRLVHLVRNIVRIIDFCAILFQVKV 264
K + +SP + SI ++ S +Q +I + + L +I + + CA++ V +
Sbjct: 84 KEIIVSPIKRWQISIGQVLSSTVIAFFQGLLVIVLGMFMGLNLSIFQFLQMCAVMLLVGI 143
Query: 263 CA*IECMYSTICAAG*YYFRIIQ*SKF*QCYFH*PLYTLRIRIIPTIFQPYLLRGPMYEK 84
+Y A F+I+ F PL L IPT P +++ +Y
Sbjct: 144 TFSCIGLYLASLAKSSTTFQIMI------TVFTFPLTFLSGAYIPTTIMPKIIQPLVYIN 197
Query: 83 NVTYLAFIFHLLTL 42
+TY IF +TL
Sbjct: 198 PLTYTTSIFRYITL 211
>UniRef50_A1WAT5 Cluster: Pseudouridylate synthase; n=5;
Comamonadaceae|Rep: Pseudouridylate synthase -
Acidovorax sp. (strain JS42)
Length = 274
Score = 33.9 bits (74), Expect = 1.6
Identities = 28/99 (28%), Positives = 43/99 (43%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNIT 317
P +VQ +E AL + + + + RTD GVH L HFD TE+ A
Sbjct: 21 PSANTVQDRLEAALGRFATQEV-HTICAGRTDAGVHGLMQVVHFD-----TELQRAPFSW 74
Query: 318 YQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
+ ++ + V+ V D F++R A+ R Y Y
Sbjct: 75 VRGTNTFLP--ADIAVQWAQPVPDAFHSRACAVARRYAY 111
>UniRef50_Q583N7 Cluster: Pseudouridylate synthase; n=1; Trypanosoma
brucei|Rep: Pseudouridylate synthase - Trypanosoma
brucei
Length = 428
Score = 33.9 bits (74), Expect = 1.6
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Frame = +3
Query: 129 RDYPDPESVQGLMEIALLKLRSL--NYPK-VVLSSRTDGGVHALNSSAHFD--LEKYGTE 293
R P +V+ + AL +LR + + PK RTD GV AL + F + T+
Sbjct: 43 RQAETPNTVEAYLVAALERLRFVEPSGPKDFSRCGRTDKGVSALGNVVSFTSRASSWATD 102
Query: 294 IYDADNITYQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYRF 440
+ Y K + ++ + VN DF+ARF+ RTY Y F
Sbjct: 103 EQQQPPLDY-CEKLNNVLPPTIRIVGWSYVNADFDARFSCTGRTYRYYF 150
>UniRef50_Q22RB7 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 862
Score = 33.9 bits (74), Expect = 1.6
Identities = 19/87 (21%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = +3
Query: 162 LMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMNKSYH 341
++EI L+++R + K ++ + + LN + E Y T++ + N Q+++SY+
Sbjct: 712 ILEITLVEVRQVVEQKTLIIVSHEQTIKQLNDNIQHLTESYQTQLQEQQNQYNQLHQSYN 771
Query: 342 --SNNKSVLVKKCIRVNDDFNARFTAI 416
K V+ +K I + + + I
Sbjct: 772 LLQQEKMVIEQKIIEITKEVETKILII 798
>UniRef50_Q9RS37 Cluster: tRNA pseudouridine synthase A; n=2;
Deinococcus|Rep: tRNA pseudouridine synthase A -
Deinococcus radiodurans
Length = 280
Score = 33.9 bits (74), Expect = 1.6
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 6/114 (5%)
Frame = +3
Query: 123 DGRDYP------DPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKY 284
DGRDY + SVQ ++ AL L + V + RTD GVHA H+D+
Sbjct: 25 DGRDYAGWQEQRNAVSVQETLQTALHALGGEGALRPVSAGRTDAGVHAEAMPLHWDVPT- 83
Query: 285 GTEIYDADNITYQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYRFAV 446
T + +N ++ + SVL + F+ARF+ R Y+YR V
Sbjct: 84 -TFRVPLVQLPRALN-AWLPASVSVLSAEVAPAG--FHARFSCTERRYVYRLWV 133
>UniRef50_O22928 Cluster: Putative tRNA pseudouridine synthase; n=1;
Arabidopsis thaliana|Rep: Putative tRNA pseudouridine
synthase - Arabidopsis thaliana (Mouse-ear cress)
Length = 510
Score = 33.9 bits (74), Expect = 1.6
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Frame = +3
Query: 129 RDYPDPESVQGLMEIALLK---LRSLNYPKV-----VLSSRTDGGVHALNSSAHFDLE 278
RD P ++++G +E+A+ K +R NY + SSRTD GVH+L +S +E
Sbjct: 83 RDDPSIKTIEGELEVAIYKAGGIRDSNYGDLHKIGWARSSRTDKGVHSLATSISLKME 140
>UniRef50_UPI00015BE519 Cluster: UPI00015BE519 related cluster; n=1;
unknown|Rep: UPI00015BE519 UniRef100 entry - unknown
Length = 247
Score = 33.5 bits (73), Expect = 2.1
Identities = 21/72 (29%), Positives = 36/72 (50%)
Frame = +3
Query: 222 SRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMNKSYHSNNKSVLVKKCIRVNDDFNA 401
SRTD GVHA+ + +E +D D + + + K + + V +FN+
Sbjct: 55 SRTDKGVHAIEFVFNVKME------FDKD-LNFLRKALNSALPKDIKIHNIEEVPLEFNS 107
Query: 402 RFTAIPRTYLYR 437
RF A+ +TY+Y+
Sbjct: 108 RFDALKKTYIYK 119
>UniRef50_Q30RR7 Cluster: Diguanylate cyclase (GGDEF domain) with
PAS/PAC sensor; n=1; Thiomicrospira denitrificans ATCC
33889|Rep: Diguanylate cyclase (GGDEF domain) with
PAS/PAC sensor - Thiomicrospira denitrificans (strain
ATCC 33889 / DSM 1351)
Length = 427
Score = 33.5 bits (73), Expect = 2.1
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 234 GGVHALNSSAH-FDLEKYGTEIYDADNITYQMNKSYHSNNKSVLVKKCIRVNDDF 395
G VH LN+ H EK E+Y D++T N++Y +++VK + + DF
Sbjct: 248 GEVHELNAVYHDITNEKLLAELYITDSLTKLYNRAYFDETINMIVKHQRKADSDF 302
>UniRef50_Q8I260 Cluster: Putative uncharacterized protein PFA0405w;
n=5; Plasmodium|Rep: Putative uncharacterized protein
PFA0405w - Plasmodium falciparum (isolate 3D7)
Length = 656
Score = 33.5 bits (73), Expect = 2.1
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +3
Query: 228 TDGGVHALNSSAHFDLEKYGTEIYDADNITYQMNKSYHSNNKSVLVKKCIRVND 389
T VH +N AH +L G DNI +NK+ + NKS ++ KC+ D
Sbjct: 559 TKNNVHMVNC-AHGNLNSKGIHTTGNDNIINPLNKNVINLNKSDILHKCLHYID 611
>UniRef50_Q7MBB9 Cluster: tRNA pseudouridine synthase A; n=1;
Gloeobacter violaceus|Rep: tRNA pseudouridine synthase A
- Gloeobacter violaceus
Length = 304
Score = 33.5 bits (73), Expect = 2.1
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYP-KVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNI 314
P +VQ +E A ++ +P + + RTD GVHA HFD K +
Sbjct: 35 PGQRTVQQCLEEATERIA--RHPVRYHAAGRTDTGVHASGQVVHFDTHKK----LAPETW 88
Query: 315 TYQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
+N + + V+ V+D ++ARFTA+ R Y Y
Sbjct: 89 VRGLNSLLPDD---IAVRAAAYVSDHWHARFTALWREYRY 125
>UniRef50_Q30XU3 Cluster: Pseudouridylate synthase; n=2;
Desulfovibrionaceae|Rep: Pseudouridylate synthase -
Desulfovibrio desulfuricans (strain G20)
Length = 278
Score = 33.1 bits (72), Expect = 2.8
Identities = 24/73 (32%), Positives = 31/73 (42%)
Frame = +3
Query: 219 SSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMNKSYHSNNKSVLVKKCIRVNDDFN 398
+ RTD GVHA AH D I DA + + V + V D F+
Sbjct: 57 AGRTDSGVHAEGQVAHLD-------IPDAKAAVDWRRALNAKLPEDISVLQAAVVPDGFH 109
Query: 399 ARFTAIPRTYLYR 437
ARF A+ + Y YR
Sbjct: 110 ARFDAVKKRYTYR 122
>UniRef50_Q2RSF6 Cluster: Putative uncharacterized protein; n=1;
Rhodospirillum rubrum ATCC 11170|Rep: Putative
uncharacterized protein - Rhodospirillum rubrum (strain
ATCC 11170 / NCIB 8255)
Length = 83
Score = 33.1 bits (72), Expect = 2.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 345 YCDKTCSFGT*YCPHHRFLCHTFPG 271
+CD+ G+ YCP H LCH PG
Sbjct: 21 FCDRPVRPGSAYCPDHHRLCHPPPG 45
>UniRef50_A3EP68 Cluster: Pseudouridylate synthase; n=1;
Leptospirillum sp. Group II UBA|Rep: Pseudouridylate
synthase - Leptospirillum sp. Group II UBA
Length = 268
Score = 33.1 bits (72), Expect = 2.8
Identities = 26/97 (26%), Positives = 47/97 (48%)
Frame = +3
Query: 150 SVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMN 329
+VQ +E A +L + ++ S RTD GV A H D+ G + D+++ +N
Sbjct: 26 AVQDHIEEAFCRLTRQDV-RISGSGRTDTGVSAAGQVFHCDIAGPG---WTPDSLSRGLN 81
Query: 330 KSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYRF 440
H + ++ + + V DF+AR + + Y YR+
Sbjct: 82 ---HFLSPAIRILQAAAVAPDFHARHDVVRKIYRYRW 115
>UniRef50_Q7YYE5 Cluster: Rhoptry protein, possible; n=1;
Cryptosporidium parvum|Rep: Rhoptry protein, possible -
Cryptosporidium parvum
Length = 1399
Score = 33.1 bits (72), Expect = 2.8
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +3
Query: 201 YPKVVLSSRTDGGVHALNSSAH-FDLEKYGTEIYDADNITYQMNKSYHSNNKSVLVKKCI 377
+PK++LS VH + SS FD Y AD Y N SNN ++L+ K +
Sbjct: 975 FPKLLLSKDE---VHNIESSTFAFDSPVNNNATYAADLTDYIKNNQLSSNNHTILLGKYL 1031
Query: 378 RVNDDFNARFTAIPR 422
+ R IP+
Sbjct: 1032 KALSTLKHRIEDIPQ 1046
>UniRef50_Q7RL67 Cluster: Histone acetyltransferase GCN5-related;
n=3; Plasmodium (Vinckeia)|Rep: Histone
acetyltransferase GCN5-related - Plasmodium yoelii
yoelii
Length = 1402
Score = 33.1 bits (72), Expect = 2.8
Identities = 21/58 (36%), Positives = 33/58 (56%)
Frame = +3
Query: 186 LRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMNKSYHSNNKSV 359
L +L+Y V+S+ DG ++ NSSA D +K I D +N + N +SNNK++
Sbjct: 604 LGNLSYNNNVISNNIDGNLNKKNSSAFIDKDK---SIKDNENC--KKNNIKNSNNKNI 656
>UniRef50_Q5CNB8 Cluster: Rhoptry protein; n=2; Cryptosporidium|Rep:
Rhoptry protein - Cryptosporidium hominis
Length = 1484
Score = 33.1 bits (72), Expect = 2.8
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +3
Query: 201 YPKVVLSSRTDGGVHALNSSAH-FDLEKYGTEIYDADNITYQMNKSYHSNNKSVLVKKCI 377
+PK++LS VH + SS FD Y AD Y N SNN ++L+ K +
Sbjct: 1060 FPKLLLSKDE---VHNIESSTFAFDSPVNNNATYAADLTDYIKNNQLSSNNHTILLGKYL 1116
Query: 378 RVNDDFNARFTAIPR 422
+ R IP+
Sbjct: 1117 KALSTLKNRIEDIPQ 1131
>UniRef50_A0DFY8 Cluster: Pseudouridylate synthase; n=1; Paramecium
tetraurelia|Rep: Pseudouridylate synthase - Paramecium
tetraurelia
Length = 414
Score = 33.1 bits (72), Expect = 2.8
Identities = 23/74 (31%), Positives = 37/74 (50%)
Frame = +3
Query: 219 SSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMNKSYHSNNKSVLVKKCIRVNDDFN 398
+ RTD GV A+ + ++ K G +D + Q+ + +L +CI V++ FN
Sbjct: 100 AGRTDKGVSAIGNVVALNVRKIGK----SDKLYAQILNRVLPEDIQIL-DECI-VDEKFN 153
Query: 399 ARFTAIPRTYLYRF 440
AR+ I R Y Y F
Sbjct: 154 ARYDCIKRVYKYYF 167
>UniRef50_Q8SQI1 Cluster: Probable DNA-3-methyladenine glycosylase;
n=1; Encephalitozoon cuniculi|Rep: Probable
DNA-3-methyladenine glycosylase - Encephalitozoon
cuniculi
Length = 208
Score = 33.1 bits (72), Expect = 2.8
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +3
Query: 102 SEKIWLKDGRDYPDPESVQG 161
SEKIWL++GR+ DPE V G
Sbjct: 143 SEKIWLEEGREVADPEIVAG 162
>UniRef50_Q3ZZP4 Cluster: Pseudouridylate synthase; n=3;
Dehalococcoides|Rep: Pseudouridylate synthase -
Dehalococcoides sp. (strain CBDB1)
Length = 246
Score = 32.7 bits (71), Expect = 3.7
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Frame = +3
Query: 150 SVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTE-IYDADNITYQM 326
++QG +E A+ KL S +V S RTD GVHA + + Y TE + I +
Sbjct: 21 TIQGELETAIRKLTS-EQTRVSGSGRTDAGVHAA-----YQVVSYLTESSLGLEKIKGGL 74
Query: 327 NKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
N Y+ + VK+ V ++F+ R AI R Y Y
Sbjct: 75 N--YYL-PPDIAVKEVHFVAENFDVRRRAISREYSY 107
>UniRef50_Q2JUJ7 Cluster: Pseudouridylate synthase; n=2;
Synechococcus|Rep: Pseudouridylate synthase -
Synechococcus sp. (strain JA-3-3Ab) (Cyanobacteria
bacteriumYellowstone A-Prime)
Length = 287
Score = 32.7 bits (71), Expect = 3.7
Identities = 31/95 (32%), Positives = 46/95 (48%)
Frame = +3
Query: 150 SVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMN 329
+VQG++E A+ LR+ + + + RTD GVHA AHFD T +N
Sbjct: 28 TVQGVLEEAIA-LRAGHPVALYGAGRTDTGVHASGQVAHFDT----TSGIPPTEWARVLN 82
Query: 330 KSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
+ V+V +V D ++ARF+A R Y Y
Sbjct: 83 DCL---PEDVVVLASAQVPDFWHARFSARWRRYRY 114
>UniRef50_A5CET3 Cluster: Pseudouridylate synthase; n=1; Orientia
tsutsugamushi Boryong|Rep: Pseudouridylate synthase -
Orientia tsutsugamushi (strain Boryong) (Rickettsia
tsutsugamushi)
Length = 284
Score = 32.7 bits (71), Expect = 3.7
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +3
Query: 150 SVQGLME--IALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDL 275
S+Q L+E I+ +++N ++ + RTD GVHAL HFDL
Sbjct: 26 SIQQLLEDKISTFTKQTVN---LIAAGRTDAGVHALGQVVHFDL 66
>UniRef50_A0ZG49 Cluster: Pseudouridylate synthase; n=3;
Cyanobacteria|Rep: Pseudouridylate synthase - Nodularia
spumigena CCY 9414
Length = 296
Score = 32.7 bits (71), Expect = 3.7
Identities = 24/72 (33%), Positives = 36/72 (50%)
Frame = +3
Query: 219 SSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMNKSYHSNNKSVLVKKCIRVNDDFN 398
+ RTD GVHA AHF+ T + +N SY + +L+K V++ ++
Sbjct: 58 AGRTDSGVHAAAQVAHFE----ATGLIPPHRWASILN-SYLP--QDILIKASAAVDNRWH 110
Query: 399 ARFTAIPRTYLY 434
ARF+A R Y Y
Sbjct: 111 ARFSAAYRRYRY 122
>UniRef50_Q8TU65 Cluster: tRNA pseudouridine synthase A; n=5;
Archaea|Rep: tRNA pseudouridine synthase A -
Methanosarcina acetivorans
Length = 269
Score = 32.7 bits (71), Expect = 3.7
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYPK---VVLSSRTDGGVHALNSSAHFDLEK 281
P+ E+V+ + AL L + PK + RTD GVHAL FD EK
Sbjct: 21 PNVETVEKELFKALRNLSIIESPKSADYTCAGRTDAGVHALGQVVAFDTEK 71
>UniRef50_A7HCM5 Cluster: tRNA-pseudouridine synthase I; n=2;
Anaeromyxobacter|Rep: tRNA-pseudouridine synthase I -
Anaeromyxobacter sp. Fw109-5
Length = 265
Score = 32.3 bits (70), Expect = 4.9
Identities = 30/99 (30%), Positives = 45/99 (45%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNIT 317
P +VQ +E ALL + +++RTD GVHAL+ F D +
Sbjct: 24 PGLPTVQDALEGALLAAGVR--ATLAVAARTDAGVHALDQVVSFS----ARAALDPAALR 77
Query: 318 YQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
+N + + V V + +RV F+AR TA R Y+Y
Sbjct: 78 GALNAAL---PEGVAVLEVLRVAPSFHARNTARARRYVY 113
>UniRef50_A6KZ34 Cluster: Putative outer membrane protein, probably
involved in nutrient binding; n=1; Bacteroides vulgatus
ATCC 8482|Rep: Putative outer membrane protein, probably
involved in nutrient binding - Bacteroides vulgatus
(strain ATCC 8482 / DSM 1447 / NCTC 11154)
Length = 1069
Score = 32.3 bits (70), Expect = 4.9
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Frame = +3
Query: 207 KVVLSS---RTDGGVHALNSSAHFDLE--KYGTEIYD-ADNITYQMNKSYHSNNKSVLVK 368
+VVL S + + G++A FDL +G Y +D+I +N Y NK V +
Sbjct: 893 QVVLGSGMPKINFGLNARFEYKRFDLSIATFGALNYHVSDDIHNSLNSCYGWGNKDVAML 952
Query: 369 KCIRVNDDFNARFTAIPRTYL 431
R ++D + +++PRTY+
Sbjct: 953 DANRFSEDGSTYLSSVPRTYV 973
>UniRef50_A5I338 Cluster: Pseudouridylate synthase; n=7;
Clostridiaceae|Rep: Pseudouridylate synthase -
Clostridium botulinum A str. ATCC 3502
Length = 246
Score = 32.3 bits (70), Expect = 4.9
Identities = 26/96 (27%), Positives = 45/96 (46%)
Frame = +3
Query: 150 SVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMN 329
++QG +E +L L + ++ S RTD GVHA A+F G+ D I ++
Sbjct: 27 TIQGKIE-NVLSLMTGEDINLIASGRTDTGVHANMQVANFHTTFQGS----TDEI---LS 78
Query: 330 KSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYR 437
Y K ++V V++ F++R + Y Y+
Sbjct: 79 YCYEYLPKDIVVYDAFHVDERFHSRLNVKKKKYTYK 114
>UniRef50_Q2FT01 Cluster: Pseudouridylate synthase; n=1;
Methanospirillum hungatei JF-1|Rep: Pseudouridylate
synthase - Methanospirillum hungatei (strain JF-1 / DSM
864)
Length = 276
Score = 32.3 bits (70), Expect = 4.9
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = +3
Query: 126 GRDY-PDPESVQGLMEIALLK---LRSLNYPKVVLSSRTDGGVHA 248
G Y PD +V+G +E A L+ + S ++ LS RTD GVHA
Sbjct: 26 GSQYQPDQRTVEGEIEAACLRAGIITSRQVSRLALSGRTDRGVHA 70
>UniRef50_Q8CXQ1 Cluster: tRNA pseudouridine synthase A; n=1;
Mycoplasma penetrans|Rep: tRNA pseudouridine synthase A
- Mycoplasma penetrans
Length = 241
Score = 32.3 bits (70), Expect = 4.9
Identities = 22/72 (30%), Positives = 36/72 (50%)
Frame = +3
Query: 219 SSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMNKSYHSNNKSVLVKKCIRVNDDFN 398
S RTD VHA++ + F + YD +I +N S ++ V +V + F+
Sbjct: 49 SGRTDKYVHAIDQTVSFKCDSD----YDPKSIQNFLN----SKLTNIYVNSIEKVPNSFH 100
Query: 399 ARFTAIPRTYLY 434
ARF+ +TY+Y
Sbjct: 101 ARFSIKSKTYMY 112
>UniRef50_P56144 Cluster: tRNA pseudouridine synthase A; n=4;
Helicobacter|Rep: tRNA pseudouridine synthase A -
Helicobacter pylori (Campylobacter pylori)
Length = 242
Score = 32.3 bits (70), Expect = 4.9
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYPKVVLSS-RTDGGVHALNSSAHFDLEKYGTEIYDADNI 314
P+ VQ +E AL +L VV+++ RTD GVHA N F K+ ++A +
Sbjct: 22 PNKLGVQDKIEDAL---NALGIKSVVIAAGRTDKGVHANNQVLSFHAPKH----WNAAKL 74
Query: 315 TYQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
Y + + +++KK N F+ARF A R Y Y
Sbjct: 75 FYYLAPKLAPH---IVLKKLEEKN--FHARFDAQKRAYRY 109
>UniRef50_A3JGC0 Cluster: Pseudouridylate synthase; n=4;
Alteromonadales|Rep: Pseudouridylate synthase -
Marinobacter sp. ELB17
Length = 303
Score = 31.9 bits (69), Expect = 6.5
Identities = 23/76 (30%), Positives = 36/76 (47%)
Frame = +3
Query: 207 KVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMNKSYHSNNKSVLVKKCIRVN 386
++V + RTD GVHA HFD T + +N + + + V+ +
Sbjct: 60 ELVCAGRTDAGVHASYQLVHFDTPSLRT----MRSWVMGINTALPFD---ISVRWAGQCQ 112
Query: 387 DDFNARFTAIPRTYLY 434
DF+ARF+A+ R Y Y
Sbjct: 113 GDFHARFSAVYRRYRY 128
>UniRef50_A0J1Y0 Cluster: Multi-sensor hybrid histidine kinase
precursor; n=3; Gammaproteobacteria|Rep: Multi-sensor
hybrid histidine kinase precursor - Shewanella woodyi
ATCC 51908
Length = 1713
Score = 31.9 bits (69), Expect = 6.5
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +3
Query: 213 VLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMNKSYHSNNKSVL 362
++S + DG + ++NS+ ++ KY E NI + M + YHS + + L
Sbjct: 520 IISIKDDGTILSVNSATE-EMFKYSAESLIGQNIKFLMPEPYHSEHSTYL 568
>UniRef50_Q0II44 Cluster: Similar to solute carrier family 25 member
25; n=2; Theria|Rep: Similar to solute carrier family 25
member 25 - Bos taurus (Bovine)
Length = 349
Score = 31.9 bits (69), Expect = 6.5
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +3
Query: 75 CNILFVHRSSEKIWLKDGRDYPDPESVQGLMEIALLKL--RSLNYPKVVLSSR 227
C L V+ +WLK GRD DP + L + L + +YP ++ +R
Sbjct: 255 CTDLAVYEMLNCLWLKSGRDMKDPSGLVSLSSVTLSTTCGQMASYPLTLVRTR 307
>UniRef50_Q9VK59 Cluster: CG5787-PA; n=1; Drosophila melanogaster|Rep:
CG5787-PA - Drosophila melanogaster (Fruit fly)
Length = 950
Score = 31.9 bits (69), Expect = 6.5
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +3
Query: 114 WLKDGRDYPDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTE 293
W KD ++ + E Q L+E L L P + + T+ V+A+ SAHF LEK
Sbjct: 780 WWKDYKNVGE-EIDQQLLECGNLNLEHCFLPNLPKLT-TEQVVYAIIKSAHFGLEKNADV 837
Query: 294 IYDA-DNITYQMNKSYHSN 347
YD I MN+++ N
Sbjct: 838 PYDTMKTIFTLMNRTFLDN 856
>UniRef50_A2G9N1 Cluster: Putative uncharacterized protein; n=2;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 462
Score = 31.9 bits (69), Expect = 6.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 138 DNPDHLSAISSQRTYVRKECYISSFHFSFAYF 43
D P+++ A ++TY R++ + H+SF YF
Sbjct: 35 DKPEYVEADEDEKTYFRRQRILIDDHYSFQYF 66
>UniRef50_Q5V192 Cluster: Putative uncharacterized protein; n=1;
Haloarcula marismortui|Rep: Putative uncharacterized
protein - Haloarcula marismortui (Halobacterium
marismortui)
Length = 124
Score = 31.9 bits (69), Expect = 6.5
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +3
Query: 93 HRSSEKIWLKDGRDYPDPESVQGLMEIALLKLRSLNYPKVVLSS--RTDGGVHALNSSAH 266
+RSSE++ + P+SV G + + P++VLS G +H ++ S H
Sbjct: 7 NRSSEQLSEQRTTAIAVPDSVSGEVSVG-------RQPRLVLSGWEHQSGFLHLIDKSVH 59
Query: 267 FDLEKYGTEIYDADNITYQMNK 332
L+ T + D +T+ MN+
Sbjct: 60 MSLQPLHTPVGDVSIVTHAMNE 81
>UniRef50_UPI0000EBDF94 Cluster: PREDICTED: hypothetical protein;
n=1; Bos taurus|Rep: PREDICTED: hypothetical protein -
Bos taurus
Length = 192
Score = 31.5 bits (68), Expect = 8.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 75 CNILFVHRSSEKIWLKDGRDYPDPESVQGLMEIAL 179
C L V+ + +WLK GRD DP + L + L
Sbjct: 82 CTDLAVYEMLKCLWLKSGRDMKDPSGLVSLSSVTL 116
>UniRef50_Q8DI79 Cluster: Tll1711 protein; n=3; Cyanobacteria|Rep:
Tll1711 protein - Synechococcus elongatus
(Thermosynechococcus elongatus)
Length = 193
Score = 31.5 bits (68), Expect = 8.6
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +3
Query: 141 DPESVQGL-MEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNIT 317
DP V+ L + LK+R LN+ V L D VHA NS L G EI D I
Sbjct: 38 DPTRVEFLGSDRFRLKMRPLNFLMVSLQPTVDLAVHA-NSDGSLQLRSLGCEIRGVDYI- 95
Query: 318 YQMNKSYH 341
N+ +H
Sbjct: 96 ---NRRFH 100
>UniRef50_Q8GB97 Cluster: Pseudouridylate synthase; n=2;
Clostridiales|Rep: Pseudouridylate synthase -
Heliobacillus mobilis
Length = 249
Score = 31.5 bits (68), Expect = 8.6
Identities = 23/76 (30%), Positives = 32/76 (42%)
Frame = +3
Query: 207 KVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMNKSYHSNNKSVLVKKCIRVN 386
K+ + RTD GVHA F T + MN K + V K V
Sbjct: 40 KITCAGRTDAGVHARGQVVDF----LTTSRIPDEKFPLAMNSLLP---KDIAVVKAETVA 92
Query: 387 DDFNARFTAIPRTYLY 434
+DF++RF A+ + Y Y
Sbjct: 93 EDFHSRFGALGKHYRY 108
>UniRef50_Q23MI2 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 3704
Score = 31.5 bits (68), Expect = 8.6
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 252 NSSAHFDLEKYGTEIYDADNITYQMNKSYHSNNKS 356
N +D ++Y T+ +++ N+ + N+ Y SNN+S
Sbjct: 3330 NYGNQYDNDEYNTDPFNSKNLNQRRNEDYQSNNQS 3364
>UniRef50_Q7TTT1 Cluster: tRNA pseudouridine synthase A; n=26;
Cyanobacteria|Rep: tRNA pseudouridine synthase A -
Synechococcus sp. (strain WH8102)
Length = 299
Score = 31.5 bits (68), Expect = 8.6
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 150 SVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFD 272
SVQ +E A+ +L + + RTD GVHA HFD
Sbjct: 40 SVQAQLEAAIEQLDPYRPIQTFAAGRTDTGVHAAGQVVHFD 80
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 413,520,980
Number of Sequences: 1657284
Number of extensions: 7611686
Number of successful extensions: 20282
Number of sequences better than 10.0: 156
Number of HSP's better than 10.0 without gapping: 19617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20181
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23183027945
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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