Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_F02
         (448 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    27   1.7  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    25   7.0  
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    24   9.3  

>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 17/74 (22%), Positives = 40/74 (54%)
 Frame = +3

Query: 90  VHRSSEKIWLKDGRDYPDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHF 269
           V ++ +KI   +  + P  E ++ L +  LL+LR +NYP+++++      ++A  +    
Sbjct: 167 VPKNPKKILPDEAAETPC-EMIKSLGKSELLRLRYMNYPELLVNQCEKLVINACINPTTA 225

Query: 270 DLEKYGTEIYDADN 311
            L+    E+Y+ ++
Sbjct: 226 TLDCVNGELYNDES 239


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 78  YISSFHFSFAYFIYMKKIDILIDPS 4
           Y +  HF + Y IY   +  L+DPS
Sbjct: 454 YYNDHHFHWGYHIYACAVIGLLDPS 478


>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
 Frame = +3

Query: 162 LMEIALLKLRSLNYPKVVLS--SRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMNKS 335
           L ++  LK  +++   + ++  +RTD GVH L +    +L  +  +  D   +  ++N++
Sbjct: 72  LKKLGYLKTNNIDAEHLCIARAARTDKGVHTLRNLISLNL--FVDKPLDISLLKTELNEA 129

Query: 336 YHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
             S    + V         FN R +   RTY Y
Sbjct: 130 LCS---QIRVWSVFPAPKYFNPRISCESRTYEY 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,797,999
Number of Sequences: 5004
Number of extensions: 35602
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)