Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_F02
(448 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0596 + 4867388-4867405,4869095-4869151,4869624-4869701,487... 42 3e-04
05_03_0280 - 11553011-11553052,11553810-11553872,11554304-115546... 34 0.045
03_02_0938 - 12563250-12563681,12564098-12564514,12565333-125654... 29 1.3
12_02_1042 + 25638585-25638711,25639585-25639745,25639873-256400... 29 2.3
06_03_1379 - 29709532-29709843,29709951-29710112,29710193-297110... 27 9.1
04_04_1523 - 34148407-34150224 27 9.1
03_01_0030 + 290232-291020 27 9.1
02_05_0338 - 28084169-28084366,28084414-28085225,28085565-280855... 27 9.1
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810... 27 9.1
>12_01_0596 +
4867388-4867405,4869095-4869151,4869624-4869701,
4870467-4870549,4870775-4870874,4871384-4871659,
4872198-4872258,4872365-4872465
Length = 257
Score = 41.5 bits (93), Expect = 3e-04
Identities = 26/76 (34%), Positives = 37/76 (48%)
Frame = +3
Query: 210 VVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMNKSYHSNNKSVLVKKCIRVND 389
+ SSRTD GVHAL++ H D+E+ + N ++V V
Sbjct: 19 IFCSSRTDTGVHALSNVCHVDVERIS-----------KRKPGEMKNEGDIMVTDVRCVAP 67
Query: 390 DFNARFTAIPRTYLYR 437
DF+AR+ A+ RTY YR
Sbjct: 68 DFHARYKALERTYHYR 83
>05_03_0280 -
11553011-11553052,11553810-11553872,11554304-11554666,
11554805-11554944,11556267-11556336
Length = 225
Score = 34.3 bits (75), Expect = 0.045
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +3
Query: 138 PDPESVQGLMEIALLKLRSLNYPKVVL--SSRTDGGVHALNSSAHF 269
P P ++Q +E AL ++ L+ ++ L + RTD GVHA AHF
Sbjct: 29 PSPPTIQCSIENALTRITKLDRKELCLVGAGRTDTGVHAWGQVAHF 74
>03_02_0938 -
12563250-12563681,12564098-12564514,12565333-12565477,
12565574-12565722,12565836-12565948,12566423-12566458,
12566558-12566816
Length = 516
Score = 29.5 bits (63), Expect = 1.3
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 9/115 (7%)
Frame = +3
Query: 117 LKDGRDYPDPESVQGLMEIALLKLRSL---NYPKVVL-----SSRTDGGVHALNSSAHFD 272
L+ R+ +++ ++E A+ K + NY K+ SSRTD GVH+L +
Sbjct: 88 LQKQRELSADSTIESVLETAIFKAGGILESNYGKLQKVGWERSSRTDKGVHSLATMISLK 147
Query: 273 LEKYGTEIYDADNITYQMNKSYHSN-NKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
+E ++ D ++ +SN +V V + F+ R + R YLY
Sbjct: 148 ME-IPDRAWENDPDGIALSNFINSNLPDNVRVFSVLPAQRSFDVRRECLYREYLY 201
>12_02_1042 +
25638585-25638711,25639585-25639745,25639873-25640064,
25640221-25640315,25640645-25640807,25640905-25641015,
25641611-25642741,25642813-25642965,25643060-25643159,
25643333-25643427,25643508-25643681,25643751-25643807,
25643887-25643958,25644151-25644249,25644320-25644451,
25644549-25644722,25644830-25644957,25645065-25645119
Length = 1072
Score = 28.7 bits (61), Expect = 2.3
Identities = 27/83 (32%), Positives = 33/83 (39%)
Frame = +3
Query: 99 SSEKIWLKDGRDYPDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLE 278
SSEK WLK RD G ME L K + P V D A+ S HF+L
Sbjct: 497 SSEKTWLKLLRDATSGRDYDG-MEKTLAKNAVMRDPTFVPGDHQDVSSTAVES--HFNLS 553
Query: 279 KYGTEIYDADNITYQMNKSYHSN 347
Y A + NK+ S+
Sbjct: 554 CYENPGITACQEILERNKNSWSD 576
>06_03_1379 -
29709532-29709843,29709951-29710112,29710193-29711086,
29712741-29712812,29714106-29714210,29714820-29714900
Length = 541
Score = 26.6 bits (56), Expect = 9.1
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +3
Query: 150 SVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDADNITYQMN 329
S++ +I KLRSL+ V + G + N S+ DLE + A NI +Q+N
Sbjct: 233 SIKPHSDIGFTKLRSLHLHCVQIIGDLSGLL--FNCSSLEDLEVFACLGVTALNIPHQLN 290
Query: 330 KSYH 341
K H
Sbjct: 291 KLRH 294
>04_04_1523 - 34148407-34150224
Length = 605
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 195 LNYPKVVLSSRTDGGVHALNSSA 263
L +P SS ++G VHALN SA
Sbjct: 526 LKFPSADKSSGSNGSVHALNRSA 548
>03_01_0030 + 290232-291020
Length = 262
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 286 PYFSRSKCALELSACTP 236
P+ SRSKC L+AC P
Sbjct: 211 PWLSRSKCMRALAACRP 227
>02_05_0338 - 28084169-28084366,28084414-28085225,28085565-28085595,
28085638-28086214,28086439-28087145,28087188-28087228,
28087253-28087366,28087517-28088108
Length = 1023
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/45 (22%), Positives = 25/45 (55%)
Frame = +1
Query: 241 YMHSIQAHTLTWKSMAQKSMMRTILRTK*TSLITVIIKVFW*RNV 375
Y+ ++ ++W+S Q + R+ + + T+L T ++ W R++
Sbjct: 892 YVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDL 936
>01_05_0320 -
20874691-20875230,20879337-20879590,20880014-20881087,
20881259-20881511,20881548-20882369
Length = 980
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = +1
Query: 241 YMHSIQAHTLTWKSMAQKSMMRTILRTK*TSLITVIIKVFW*RNV 375
Y ++ ++WKS Q + R+ + + T+L T ++ W R +
Sbjct: 848 YAFTLGGGAVSWKSCKQTILTRSTMEAELTALDTATVEAEWLREL 892
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,792,730
Number of Sequences: 37544
Number of extensions: 199437
Number of successful extensions: 434
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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