Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_F02
         (448 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC034304-1|AAH34304.1|  303|Homo sapiens pseudouridylate synthas...    67   2e-11
AL139287-3|CAI23172.1|  303|Homo sapiens pseudouridylate synthas...    67   2e-11
AK075292-1|BAC11527.1|  303|Homo sapiens protein ( Homo sapiens ...    67   2e-11
BC031671-1|AAH31671.1|  251|Homo sapiens SLC25A41 protein protein.     30   3.1  
AK097761-1|BAC05163.1|  232|Homo sapiens protein ( Homo sapiens ...    30   3.1  
AL118506-1|CAC15491.1|  469|Homo sapiens chromosome 20 open read...    29   9.5  

>BC034304-1|AAH34304.1|  303|Homo sapiens pseudouridylate
           synthase-like 1 protein.
          Length = 303

 Score = 67.3 bits (157), Expect = 2e-11
 Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
 Frame = +3

Query: 153 VQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLE-KYGTEIYDADNITYQMN 329
           VQ  +E A  +L S+   +  +SSRTD GVHAL+++AH D++ + G   +  + +   +N
Sbjct: 40  VQNYLEEAAERLNSVEPVRFTISSRTDAGVHALSNAAHLDVQRRSGRPPFPPEVLAEALN 99

Query: 330 KSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYRFA 443
              H  + ++ V +  RV  DF+AR  A  RTYLYR A
Sbjct: 100 T--HLRHPAIRVLRAFRVPSDFHARHAATSRTYLYRLA 135


>AL139287-3|CAI23172.1|  303|Homo sapiens pseudouridylate
           synthase-like 1 protein.
          Length = 303

 Score = 67.3 bits (157), Expect = 2e-11
 Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
 Frame = +3

Query: 153 VQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLE-KYGTEIYDADNITYQMN 329
           VQ  +E A  +L S+   +  +SSRTD GVHAL+++AH D++ + G   +  + +   +N
Sbjct: 40  VQNYLEEAAERLNSVEPVRFTISSRTDAGVHALSNAAHLDVQRRSGRPPFPPEVLAEALN 99

Query: 330 KSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYRFA 443
              H  + ++ V +  RV  DF+AR  A  RTYLYR A
Sbjct: 100 T--HLRHPAIRVLRAFRVPSDFHARHAATSRTYLYRLA 135


>AK075292-1|BAC11527.1|  303|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90811 fis, clone Y79AA1000888, weakly similar to
           TRNA PSEUDOURIDINE SYNTHASE A (EC 4.2.1.70). ).
          Length = 303

 Score = 67.3 bits (157), Expect = 2e-11
 Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
 Frame = +3

Query: 153 VQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLE-KYGTEIYDADNITYQMN 329
           VQ  +E A  +L S+   +  +SSRTD GVHAL+++AH D++ + G   +  + +   +N
Sbjct: 40  VQNYLEEAAERLNSVEPVRFTISSRTDAGVHALSNAAHLDVQRRSGRPPFPPEVLAEALN 99

Query: 330 KSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYRFA 443
              H  + ++ V +  RV  DF+AR  A  RTYLYR A
Sbjct: 100 T--HLRHPAIRVLRAFRVPSDFHARHAATSRTYLYRLA 135


>BC031671-1|AAH31671.1|  251|Homo sapiens SLC25A41 protein protein.
          Length = 251

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +3

Query: 75  CNILFVHRSSEKIWLKDGRDYPDPESVQGLMEIALLKL--RSLNYPKVVLSSR 227
           C  L V+   +  W+K GRD  DP  +  L  + L     +  +YP  ++ +R
Sbjct: 138 CTDLAVYEMLQCFWVKSGRDMGDPSGLVSLSSVTLSTTCGQMASYPLTLVRTR 190


>AK097761-1|BAC05163.1|  232|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40442 fis, clone TESTI2040102, moderately
           similar to Oryctolagus cuniculus peroxisomal
           Ca-dependent solute ).
          Length = 232

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +3

Query: 75  CNILFVHRSSEKIWLKDGRDYPDPESVQGLMEIALLKL--RSLNYPKVVLSSR 227
           C  L V+   +  W+K GRD  DP  +  L  + L     +  +YP  ++ +R
Sbjct: 119 CTDLAVYEMLQCFWVKSGRDMGDPSGLVSLSSVTLSTTCGQMASYPLTLVRTR 171


>AL118506-1|CAC15491.1|  469|Homo sapiens chromosome 20 open reading
           frame 135 protein.
          Length = 469

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +1

Query: 214 YYPAAQMVEYMHSIQAHTLTWKSMAQKSMMRTILRTK*TSLITVIIKV 357
           ++P A +V Y  S+   T TW +M    +   +L      L+ + +KV
Sbjct: 235 HFPPAHLVVYGWSVGGFTATWATMTYPELGALVLDATFDDLVPLALKV 282


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,279,254
Number of Sequences: 237096
Number of extensions: 1134825
Number of successful extensions: 1900
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1897
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3644351872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)