Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_F02
         (448 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024214-7|AAF36078.2|  189|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z72508-5|CAA96638.1|  525|Caenorhabditis elegans Hypothetical pr...    27   4.7  
AF016419-3|AAG24048.1|  529|Caenorhabditis elegans Hypothetical ...    27   4.7  
AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical ...    27   4.7  
Z47073-1|CAA87371.3|  931|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U27312-11|AAA68254.1|  461|Caenorhabditis elegans Forkhead trans...    27   8.2  
U23521-5|AAC46813.2|  250|Caenorhabditis elegans Hypothetical pr...    27   8.2  
AF016422-7|AAW88391.1|  296|Caenorhabditis elegans Serpentine re...    27   8.2  

>AC024214-7|AAF36078.2|  189|Caenorhabditis elegans Hypothetical
           protein Y77E11A.8 protein.
          Length = 189

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 312 ITYQMNKSYHSNNKSVLVKKCIR-VNDDFNARFTAI 416
           I+Y+MN S + N   +L+  CIR ++  F AR   I
Sbjct: 122 ISYKMNYSCNGNFNGLLILHCIRKISKSFQARIDGI 157


>Z72508-5|CAA96638.1|  525|Caenorhabditis elegans Hypothetical
           protein F28H7.6 protein.
          Length = 525

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 25/105 (23%), Positives = 43/105 (40%)
 Frame = +3

Query: 126 GRDYPDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDLEKYGTEIYDA 305
           G +Y +P     + +  L   +  N    +L S+ +G V  LN   +FD  K+G  + + 
Sbjct: 61  GENYINPSFCSNIDDQVLTDEKYSNC--TILQSK-NGSVLKLNFWTNFDTFKFGVNLLEL 117

Query: 306 DNITYQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLYRF 440
            N+T ++    +    + L     R  +D    FT  P     RF
Sbjct: 118 KNVTLEL---VYQTELTYLYFTAFRKCEDCLFNFTKNPSLVGLRF 159


>AF016419-3|AAG24048.1|  529|Caenorhabditis elegans Hypothetical
           protein F07G11.3 protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = +3

Query: 276 EKYGTEIYDADNITYQMNKSYHSNNKSVLVKKCIRVNDDFNARFTAIPRTYLY 434
           EKY    Y+           +  + K  L  KC+R+N  + A  T  P TY Y
Sbjct: 462 EKYYDLFYNNRKTEITCPGPHFCDFKQHLTIKCMRINATYTAMETLSPVTYYY 514


>AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical
           protein C07H6.3 protein.
          Length = 1378

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 369 KCIRVNDDFNARFTAIPRTYLY 434
           +C    DDF   FTA+P+T +Y
Sbjct: 347 QCAITLDDFKKSFTAVPKTTIY 368


>Z47073-1|CAA87371.3|  931|Caenorhabditis elegans Hypothetical
           protein ZC506.1 protein.
          Length = 931

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = +3

Query: 117 LKDGRDYPDPESVQGLMEIALLKLRSLNYPKVVLSSRTDGGVHALNSSAHFDL-EKYGTE 293
           L+ G+ +  PE  Q  +    + L +L+YP+V+L+ R +G     +   H ++ E++ TE
Sbjct: 789 LRYGKMFKFPEYPQCSLRDGDIILHNLDYPEVILNLRFNGINQDSDPRLHQEIVERHVTE 848

Query: 294 I 296
           +
Sbjct: 849 L 849


>U27312-11|AAA68254.1|  461|Caenorhabditis elegans Forkhead
           transcription factor familyprotein 5 protein.
          Length = 461

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 446 HSKSV*ISPRNSCKPSIKVIIHSDTFLYQNTFIIT 342
           H  S  IS   +  PSIK IIH   +LY   F+++
Sbjct: 30  HEVSKSISINMTLFPSIKWIIHKSFYLYLTYFVMS 64


>U23521-5|AAC46813.2|  250|Caenorhabditis elegans Hypothetical
          protein F41C3.6 protein.
          Length = 250

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -1

Query: 79 LHI*LSFFICLLYLHEENRYF 17
          + I ++ F+ LL+L +ENRYF
Sbjct: 1  MDILINIFVLLLFLPQENRYF 21


>AF016422-7|AAW88391.1|  296|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 59 protein.
          Length = 296

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 314 NIVRIIDFCAILFQVKVCA 258
           ++V I+ FCA+LF V  C+
Sbjct: 3   DVVTIVAFCALLFSVTTCS 21


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,877,968
Number of Sequences: 27780
Number of extensions: 195758
Number of successful extensions: 528
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)