Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_F02
         (448 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   4.6  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   6.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   6.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   6.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.1  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 410 CKPSIKVIIHSDTFLYQNTFIITVIRLV 327
           C+P +   I +    Y N+F+  VI  V
Sbjct: 652 CQPGVTAFIVTSWLGYMNSFVNPVIYTV 679


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -2

Query: 144 DQDNPDHL--SAISSQRTYVRKECYISSFHFSFAYFIYMKKI 25
           D  N ++L  SA+ S  T +R   +   +    +YF+  KK+
Sbjct: 396 DFQNKNNLIPSALQSYSTSMRDPAFYMLYQKILSYFLRYKKL 437


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -2

Query: 144 DQDNPDHL--SAISSQRTYVRKECYISSFHFSFAYFIYMKKI 25
           D  N ++L  SA+ S  T +R   +   +    +YF+  KK+
Sbjct: 396 DFQNKNNLIPSALQSYSTSMRDPAFYMLYQNILSYFLRYKKL 437


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 407 KPSIKVIIHSDTFLYQNTFIITVIRLVHLVRNIVRIID 294
           KPS    + S    + NT  I V+  VH+V  ++ ++D
Sbjct: 550 KPSRSSTLVSFLQPFSNTLWILVMVSVHVVALVLYLLD 587


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 114  ISSQRTYVRKECYISSFHFSFAY 46
            +  Q  Y+  E   SSF+ SF Y
Sbjct: 942  VYKQNDYIVDESSSSSFYSSFLY 964


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,333
Number of Sequences: 438
Number of extensions: 2700
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)