Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_F01
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        37   0.001
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans...    27   1.5  
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    27   2.0  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    25   4.5  
SPBC216.06c |swi1||replication fork protection complex subunit S...    25   4.5  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   6.0  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   6.0  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   6.0  
SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p...    25   7.9  
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    25   7.9  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    25   7.9  

>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 37.1 bits (82), Expect = 0.001
 Identities = 21/60 (35%), Positives = 34/60 (56%)
 Frame = +3

Query: 300 LEVMDKSLEENLFEAIRNEDHVSITQFILQGANPTKTTRTGKTCLGEAANLGRIEIIELL 479
           + + ++S+ +N+ E + N   V          +PT TTR G+TCL  AA  GR+ I++LL
Sbjct: 77  ISINNRSVPDNVIEELINRSDV----------DPTITTRGGQTCLHYAAGKGRLSIVQLL 126


>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 360 HVSITQFILQGANPTKTTRTGKTCLGE 440
           H  I  F++QG +PT T R G +  G+
Sbjct: 44  HRVIPDFVIQGGDPTGTGRGGTSIYGD 70


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 360 HVSITQFILQGANPTKTTRTGKTCLGE 440
           H  + +F++QG +PT T   G++  GE
Sbjct: 55  HRVVPEFLIQGGDPTGTGMGGESIYGE 81


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 300 LEVMDKSLEENLFEAIRNEDHV 365
           + V+D +LE +LF A+ N DHV
Sbjct: 717 IHVIDDTLE-SLFSAVNNSDHV 737


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/49 (20%), Positives = 26/49 (53%)
 Frame = +3

Query: 240 YFQIKLLQEE*NIQSYKLPWLEVMDKSLEENLFEAIRNEDHVSITQFIL 386
           +F    ++++ ++  Y+L +L V+DK   ++++ +  N       QF +
Sbjct: 595 FFYRIFVKQKCHVYLYRLDFLRVLDKMFNDHVYFSTTNSARQDFEQFFV 643


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 276 YFTLLVIVL-FENIHIKLFPYLFLHH 202
           Y  L + ++ F+N++ KLF Y   HH
Sbjct: 544 YIDLFISLMSFKNLNFKLFDYNLAHH 569


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 15  LCRSSHSSVT*VL*IGIIMFKRV-SISSKSHFCSYNKFWN 131
           LC +S  S    L   I  F  + S+S +++ C+ N+FWN
Sbjct: 248 LCSNSVQSAHTNLQPDITSFVAILSLSHEAYHCTENEFWN 287


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 88  MLTRLNIIIPIYNTYVTLECELLH 17
           +LT L+  +P++ T V+  CEL+H
Sbjct: 586 VLTVLSSSVPLFQTDVSGACELVH 609


>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 285 YKLPWLEVMDKSLEENL 335
           YK P+  + DKSLE+NL
Sbjct: 207 YKFPFKILADKSLEDNL 223


>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -3

Query: 252 LFENIHIKLFPYLFLHHSTGMVLQCTLSCQFTFIFKHP*INSKIYCNY 109
           L EN+H  +FP + +  + G   +     + T    H  +N K+Y  Y
Sbjct: 67  LLENMHASVFPTVDVRITHGYDSKSDSLARLTAQMNHCPVNVKLYSVY 114


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 234 YEYFQIKLLQEE*NIQSYKLPWLEVM 311
           + YF++ +   E N +SY LP+L +M
Sbjct: 203 HPYFELIIQNLEKNAKSYWLPYLTIM 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,721,644
Number of Sequences: 5004
Number of extensions: 31937
Number of successful extensions: 109
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)