Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_F01
(482 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0046 - 31263294-31263610,31263873-31264026,31265514-312655... 37 0.010
03_05_0690 + 26778567-26778804,26778950-26779024,26779995-267800... 35 0.039
06_01_0924 - 7131937-7132041,7132309-7132407,7132498-7132596,713... 34 0.052
03_05_0688 + 26762668-26762893,26763027-26763101,26763865-267640... 33 0.091
03_06_0028 + 31141652-31141769,31142609-31142733,31143234-311433... 33 0.12
08_02_1445 + 27149983-27150382,27151203-27151612,27151955-27152818 31 0.48
12_02_0642 + 21454142-21454251,21454683-21454872,21454988-214550... 30 0.85
07_03_1558 - 27722852-27722963,27723191-27723240,27723338-277234... 29 2.0
12_02_0639 + 21443480-21443589,21444022-21444211,21444327-214444... 29 2.6
06_03_0913 + 25913231-25913609,25913702-25913775,25914400-259145... 28 3.4
02_03_0295 - 17383064-17383087,17383314-17383463,17383922-173840... 28 4.5
05_03_0187 + 9413575-9414895,9415014-9415289,9415513-9415631,941... 27 6.0
02_03_0291 - 17345049-17345088,17345137-17345169,17345332-173454... 27 6.0
01_06_0703 - 31326790-31326894,31327015-31327126,31327324-313274... 27 6.0
11_01_0151 - 1263237-1263406,1267405-1267646,1267681-1267781,126... 27 7.9
08_02_1578 - 27992848-27992893,27993431-27993515,27994107-279942... 27 7.9
03_01_0340 - 2680860-2682197 27 7.9
>03_06_0046 -
31263294-31263610,31263873-31264026,31265514-31265551,
31265941-31266631
Length = 399
Score = 36.7 bits (81), Expect = 0.010
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +3
Query: 315 KSLEENLFEAIRNEDHVSITQFILQGANPTKTTRTGKTCLGEAANLGRIEIIELLI 482
KS EE L A + D +IT + +GA+PT +G T L AA G +++LL+
Sbjct: 11 KSPEELLCAAAESGDAEAITGLLAEGADPTHFDASGLTPLMHAATGGHAAVVQLLL 66
>03_05_0690 +
26778567-26778804,26778950-26779024,26779995-26780099,
26780869-26781000,26781432-26781571,26782213-26782323,
26782690-26782812,26784166-26784267,26784536-26784546,
26784878-26785103,26785363-26785401,26785413-26785583,
26785674-26785753,26785976-26786039
Length = 538
Score = 34.7 bits (76), Expect = 0.039
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +3
Query: 333 LFEAIRNEDHVSITQFILQGANPTKTTRTGKTCLGEAANLGRIEIIELLI 482
LF A+ + +++ F+ +GA+P K G L EAA +G + I LL+
Sbjct: 144 LFCAVLDGQEITVKYFLDKGADPNKKDAEGFAPLHEAAKIGNVGIARLLL 193
>06_01_0924 -
7131937-7132041,7132309-7132407,7132498-7132596,
7132807-7132905,7133068-7133166,7133316-7133395,
7133522-7133843
Length = 300
Score = 34.3 bits (75), Expect = 0.052
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +3
Query: 300 LEVMDKSLEENLFEAIRNEDHVSITQFILQGANPTKTTRTGKTCLGEAANLGRIEIIELL 479
+ ++DK L +A+ + I+ + +GANP R G T L A +G ++ ++LL
Sbjct: 162 INLLDKDGFTPLHKAVIGKKEAVISHLLRRGANPHVRDRDGATPLHYAVQVGALQTVKLL 221
Query: 480 I 482
I
Sbjct: 222 I 222
>03_05_0688 +
26762668-26762893,26763027-26763101,26763865-26764032,
26764983-26765114,26765538-26765677,26765840-26765908,
26766325-26766435,26766854-26766973,26768223-26768324,
26769608-26769778,26769865-26769944,26770119-26770182
Length = 485
Score = 33.5 bits (73), Expect = 0.091
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +3
Query: 333 LFEAIRNEDHVSITQFILQGANPTKTTRTGKTCLGEAANLGRIEIIELLI 482
LF A+ + +++ F+ +GA+P K G L EAA G + I LL+
Sbjct: 161 LFCAVLDGQEITVKYFLDKGADPNKKDAAGFAPLHEAAKKGHVGIARLLL 210
>03_06_0028 +
31141652-31141769,31142609-31142733,31143234-31143380,
31143750-31143884
Length = 174
Score = 33.1 bits (72), Expect = 0.12
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = +3
Query: 387 QGANPTKTTRTGKTCLGEAANLGRIEIIELLI 482
QGAN TT G+T L AA+ GR+ I E LI
Sbjct: 39 QGANVDLTTDAGRTALHYAASKGRLNIAETLI 70
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +3
Query: 300 LEVMDKSLEENLFEAIRNEDHVSITQFILQGANPTKTTRTGKTCLGEAANLGRIEIIE 473
++ +DK+ + L A+ +ED + GA+ + G T LG A++ R +I+
Sbjct: 109 VDAVDKTGQTPLMHAVISEDKAVALLLVRHGADVAIEDKEGYTVLGRASDSFRPALID 166
>08_02_1445 + 27149983-27150382,27151203-27151612,27151955-27152818
Length = 557
Score = 31.1 bits (67), Expect = 0.48
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +3
Query: 294 PWLEVMDKSLEENLFEAIRNEDHVSITQFILQG-ANPTKTTRT-GKTCLGEAANLGRIEI 467
P L + S+ + H I +L+ AN + R GKT L AA LG +EI
Sbjct: 144 PALAMTTNSVNATALDTAAILGHTEIVNLLLESDANLARIARNNGKTVLHSAARLGHVEI 203
Query: 468 IELLI 482
+ L+
Sbjct: 204 VRSLL 208
>12_02_0642 +
21454142-21454251,21454683-21454872,21454988-21455069,
21455224-21455802,21455854-21456909,21457133-21457251,
21457369-21457812
Length = 859
Score = 30.3 bits (65), Expect = 0.85
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +1
Query: 229 FYMNIFK*NYYKKSEIYNPTNYRGLKLWINHLKKIYLKPSVMKIMFQLHSLYCKEL 396
+Y+N + Y K EI + ++R K W+NH P++ K+ ++ SL C L
Sbjct: 650 YYLNPYY-YYPNKQEIESDGSFRAAKWWLNHGTS---TPNLRKLAARILSLTCSSL 701
>07_03_1558 -
27722852-27722963,27723191-27723240,27723338-27723406,
27723507-27723571,27724058-27724145,27724294-27724362
Length = 150
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 360 HVSITQFILQ-GANPTKTTRTGKTCLGEAANLGRIEIIELLI 482
H+++ Q+++Q GAN T T L A G IE+I+ LI
Sbjct: 62 HLAVVQYLIQNGANVNATNSEKNTPLHWACLNGHIEVIKALI 103
>12_02_0639 +
21443480-21443589,21444022-21444211,21444327-21444408,
21444563-21445054,21445221-21446246,21446470-21446588,
21446706-21447149
Length = 820
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 229 FYMNIFK*NYYKKSEIYNPTNYRGLKLWINHLKKIYLKPSVMKIMFQLHSLYC 387
+Y+N + Y K EI + ++R K W+NH P++ K+ ++ SL C
Sbjct: 611 YYLNPYY-YYPNKQEIESDGSFRAAKWWLNHGTS---TPNLRKLAARILSLTC 659
>06_03_0913 +
25913231-25913609,25913702-25913775,25914400-25914540,
25914834-25914946,25915359-25915491,25916213-25916351,
25916428-25916527,25916906-25916963,25917122-25917199,
25917278-25917376,25917657-25917735,25917826-25917974,
25918529-25918834,25918994-25919032
Length = 628
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 363 VSITQFILQGANPTKTTRTGKTCLGEAANLGRIEIIELLI 482
V + + + GA+ TG+T L +A G I++ ELL+
Sbjct: 144 VPVVELLQHGADVNAVDHTGQTALHWSAVRGHIQVAELLL 183
>02_03_0295 -
17383064-17383087,17383314-17383463,17383922-17384038,
17385506-17385592,17386269-17386408,17387708-17387839,
17387927-17387936,17388949-17388999,17389038-17389083,
17389570-17389690,17389775-17389913
Length = 338
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 351 NEDHVSITQFILQ-GANPTKTTRTGKTCLGEAANLGRIEIIELLI 482
N +V+ +++L GA+P K G T L AA G ++ELL+
Sbjct: 132 NGANVATVRYLLDHGAHPEKADNKGFTPLHFAAEEGYCNVVELLL 176
>05_03_0187 +
9413575-9414895,9415014-9415289,9415513-9415631,
9415749-9416192
Length = 719
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 229 FYMNIFK*NYY--KKSEIYNPTNYRGLKLWINHLKKIYLKPSVMKIMFQLHSLYC 387
+Y+N + YY K EI + ++R K W+NH P++ K+ ++ SL C
Sbjct: 510 YYLNPY---YYFPNKQEIESDGSFRAAKWWLNHGTS---TPNLRKLAARILSLTC 558
>02_03_0291 -
17345049-17345088,17345137-17345169,17345332-17345411,
17345512-17345682,17347181-17347282,17348812-17348955,
17350228-17350350,17351929-17352006,17352224-17352363,
17353480-17353611,17354092-17354262,17354431-17354496,
17354575-17354596
Length = 433
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 366 SITQFILQGANPTKTTRTGKTCLGEAANLGRIEIIELLI 482
+++ + GANP K G T L A G EI+++L+
Sbjct: 102 TVSYLLDHGANPDKPNEKGCTPLHLAVEQGHCEIVKVLL 140
>01_06_0703 -
31326790-31326894,31327015-31327126,31327324-31327445,
31327573-31327658,31327783-31327901,31327991-31328053,
31328142-31328221,31328801-31328921,31329040-31329125,
31329318-31329413,31329510-31329584,31329869-31330210
Length = 468
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 357 DHVSITQFILQGANPTKTTRTGKTCLGEAANLGRIEIIELLI 482
D I + + GA+P G+T + AA G+ E++ELL+
Sbjct: 58 DVEGIQELLDAGADPNFRDSDGRTAMHIAACEGQAEVVELLL 99
>11_01_0151 -
1263237-1263406,1267405-1267646,1267681-1267781,
1268010-1268780
Length = 427
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 303 EVMDKSLEENLFEAIRNEDHVSITQFILQGANPTKTTRTGKTCLG 437
E+ DK + +FE + + H S Q G + T TG C G
Sbjct: 257 EIDDKKGKRPMFEELTEKVHASAVQIACMGTS-TGRKETGDACAG 300
>08_02_1578 -
27992848-27992893,27993431-27993515,27994107-27994240,
27994579-27994640,27994736-27994831,27994952-27995023
Length = 164
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 360 HVSITQFILQGANPTKTTRTGKTCLG 437
H I FI+QG +PT T R G++ G
Sbjct: 52 HRIIKDFIVQGGDPTGTGRGGESIYG 77
>03_01_0340 - 2680860-2682197
Length = 445
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 297 WLEVMDKSLEENLFEAIRNEDHVSITQFILQGANPTKTTRTGKT 428
W V D+S+ L E +R +HV + + + + T+ R G+T
Sbjct: 302 WSRVWDRSITSPLKEFVRKGEHV-LERSLSESRKDTRRGRNGET 344
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,860,641
Number of Sequences: 37544
Number of extensions: 162233
Number of successful extensions: 378
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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