Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_E22
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1149 - 9134390-9134600,9134732-9134790,9135650-9135724,913...    31   0.64 
04_03_0022 + 9615468-9615568,9617300-9617474,9617563-9617682           29   2.0  
02_01_0035 - 220036-221419,222050-222801                               29   2.6  
01_01_0402 + 3046504-3046582,3047265-3047487,3047954-3048107,304...    28   4.5  
12_02_0096 - 13573612-13573632,13573846-13573884,13574160-135744...    27   6.0  
01_05_0016 + 17177812-17178084,17178358-17178480,17178526-171788...    27   7.9  

>01_01_1149 -
           9134390-9134600,9134732-9134790,9135650-9135724,
           9135815-9135934,9136012-9136183,9136277-9136335,
           9136516-9136572,9136900-9136998,9137088-9137114,
           9137607-9137649,9137779-9138023
          Length = 388

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -3

Query: 318 FKLMAFTIMTMTTTSNQLVYSNSYHS-KPKTKRKASEEKFSSSLPASAKSRVVPPSLIS 145
           +  + +TI T+  T   + YS+ YH  K K  R  S+ +      AS + +++ P L S
Sbjct: 102 YMALLYTITTVILTGQTVYYSHIYHRLKAKKARATSKPQRHQRADASLREKLLGPKLPS 160


>04_03_0022 + 9615468-9615568,9617300-9617474,9617563-9617682
          Length = 131

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 248 ITVSPRPRGKPLKKNFRALCQRVPNPGW 165
           + + P PRGKP  +  RA+     NPGW
Sbjct: 97  VFILPYPRGKPGNRGNRAVTGGKLNPGW 124


>02_01_0035 - 220036-221419,222050-222801
          Length = 711

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 25  HHGPPYKVPNFTKFADIKGIPQLEELEKALAAKG 126
           HH PP   P+   F    GIP  ++L    AA G
Sbjct: 70  HHPPPQMPPHLAHFGGAGGIPFTQQLLHQAAAAG 103


>01_01_0402 +
           3046504-3046582,3047265-3047487,3047954-3048107,
           3048253-3048355,3048554-3048738,3048972-3049051,
           3049433-3049511,3050015-3050096,3050221-3050279,
           3050379-3050684,3050825-3050989
          Length = 504

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 182 VPNPGWYLQASFLIQGSLRPLAARAFSSSSS 90
           V   G  L+++ L QG+LRPL    FSS  S
Sbjct: 204 VAGEGAELRSTLLAQGALRPLTRLMFSSKGS 234


>12_02_0096 -
           13573612-13573632,13573846-13573884,13574160-13574493,
           13574660-13574830,13574913-13575730,13575812-13576114,
           13576352-13577085,13577174-13577303
          Length = 849

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -3

Query: 294 MTMTTTSNQLVYSNSYHSKPKTKRKASEEKFSSSLPASAKSRVV 163
           +T    S+ +VY   Y S+ + KRK S+E+  + L A  K +V+
Sbjct: 274 VTFENKSDAVVYQELYSSQYR-KRKVSKEERDACLKAELKVKVI 316


>01_05_0016 +
           17177812-17178084,17178358-17178480,17178526-17178862,
           17178896-17179039,17179555-17180219
          Length = 513

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 40  YKVPNFTKFADIKGIPQLEELEKALAAKG 126
           +KVP+F+KF+   G+   E + + LA  G
Sbjct: 54  FKVPDFSKFSRQDGVSTFEHISRFLAQCG 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,321,515
Number of Sequences: 37544
Number of extensions: 196113
Number of successful extensions: 624
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)