Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_E22
         (479 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3244|AAF46744.1|  110|Drosophila melanogaster CG10320-P...    73   2e-13
AF220096-1|AAF26436.1|  380|Drosophila melanogaster homeobox pro...    31   0.62 
AE013599-1884|AAS64854.1|  200|Drosophila melanogaster CG30067-P...    30   1.9  
AE013599-1883|AAM71002.1|  181|Drosophila melanogaster CG30067-P...    30   1.9  
AE014297-3396|AAF56194.2| 2072|Drosophila melanogaster CG10192-P...    29   4.4  

>AE013599-3244|AAF46744.1|  110|Drosophila melanogaster CG10320-PA
           protein.
          Length = 110

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
 Frame = +1

Query: 10  MGGDVHHGPPYKVPNFTKFADIKGIPQLEELEKALAAKGLKDPWIRNEAWRYHP-GFGTR 186
           MGG  HHG PY VP+ + +  ++ +PQL E+++AL  +GLKDPW+RNE WRY P  FGT 
Sbjct: 1   MGG--HHGEPYTVPHASTYK-VESVPQLVEVKEALGRQGLKDPWLRNEVWRYEPKAFGTH 57

Query: 187 WQR 195
             R
Sbjct: 58  RSR 60


>AF220096-1|AAF26436.1|  380|Drosophila melanogaster homeobox
           protein Scarecrow protein.
          Length = 380

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -3

Query: 300 TIMTMTTTSNQLVYSNS-YHSKPKTKRKASEEKFSSSLPASAKSRVVPPSLISN 142
           +++ +T T  ++ + N  Y  K + KRKA  E+   + PAS+  RV  P L+ +
Sbjct: 200 SLIHLTPTQVKIWFQNHRYKCKRQAKRKAMAEQNQHNQPASSPRRVAVPVLVKD 253


>AE013599-1884|AAS64854.1|  200|Drosophila melanogaster CG30067-PB,
           isoform B protein.
          Length = 200

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -1

Query: 176 NPGWYLQASFLIQGSLRPLAARAFSSSSSCGIPFMSANFVKLGTL 42
           N    LQ + LIQ  +RP+  RAFS+  +  I    +NF K  T+
Sbjct: 87  NASSVLQGNRLIQAKVRPMLERAFSNEPT--IDAYESNFAKCSTV 129


>AE013599-1883|AAM71002.1|  181|Drosophila melanogaster CG30067-PA,
           isoform A protein.
          Length = 181

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -1

Query: 176 NPGWYLQASFLIQGSLRPLAARAFSSSSSCGIPFMSANFVKLGTL 42
           N    LQ + LIQ  +RP+  RAFS+  +  I    +NF K  T+
Sbjct: 68  NASSVLQGNRLIQAKVRPMLERAFSNEPT--IDAYESNFAKCSTV 110


>AE014297-3396|AAF56194.2| 2072|Drosophila melanogaster CG10192-PA
           protein.
          Length = 2072

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = -3

Query: 345 NNIKSTHYSFKLMAFTIMTMTTTSNQLVYSNSYHSKPKTKRKASEEKFSSSLPASAKSRV 166
           +N+  TH S  L+   +   T T  Q V    +  + K +R     K S++ PAS  + V
Sbjct: 592 DNVTETHNSLPLVQSDLPDTTDTCQQPVL---FQEQAKKQRPKLANKQSTATPASIANDV 648

Query: 165 VPPSLISNPGV 133
              +    PGV
Sbjct: 649 AEAAASGCPGV 659


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,060,603
Number of Sequences: 53049
Number of extensions: 335207
Number of successful extensions: 1257
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1256
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1663799760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)