Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_E22
         (479 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.7  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   2.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.2  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   5.2  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   6.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   6.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 372  TTNSTILLFNNIKSTHYSFKLMAFT 298
            T++S  +L    K T+YS +++AFT
Sbjct: 1136 TSSSETILHGLKKYTNYSMQVLAFT 1160


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +3

Query: 207 FLQRLSSWSWAYCDNCWN 260
           F+   S   W  C+N WN
Sbjct: 89  FMSMRSELPWGSCNNYWN 106


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -3

Query: 339 IKSTHYSFKLMAFTIMTMTTTSNQLVYSNS 250
           I S HY  K M   +M M  +   ++Y  S
Sbjct: 261 IPSDHYQVKAMVEIVMKMKWSYVSIIYEES 290


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 306 AFTIMTMTTTSNQLVYSNSYHSKPKTKRKAS 214
           A TI T+TTT+     + +  + P T + AS
Sbjct: 655 ATTITTITTTTTTTTTTTTTTTTPNTTQNAS 685


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 210 LQRLSSWSWAYCDNC 254
           L+   +WSWA   NC
Sbjct: 105 LEPYPNWSWAKNQNC 119


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 25  HHGPPYKVPNFTKFADIKG 81
           H+ PP+ + N   F  I+G
Sbjct: 237 HNYPPFMLSNSLNFPQIRG 255


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 25  HHGPPYKVPNFTKFADIKG 81
           H+ PP+ + N   F  I+G
Sbjct: 237 HNYPPFMLSNSLNFPQIRG 255


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +1

Query: 10  MGGDVHHGPPYKVPNFTKFADIKGIPQLEELEKALAAKGLK 132
           +GGD      Y+V  + ++ D      ++  E +   KGLK
Sbjct: 446 IGGDSDLVERYEVRCYPRYDDATNATVIQTSELSATFKGLK 486


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,374
Number of Sequences: 438
Number of extensions: 2179
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)