Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_E21
(452 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc... 39 4e-04
SPAC1B3.02c |||transcription elongation factor, Elf1 family|Schi... 27 1.8
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 26 3.1
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 25 4.1
SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase Pp... 25 4.1
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 25 5.4
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos... 25 7.2
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy... 25 7.2
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S... 24 9.5
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 24 9.5
>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 402
Score = 38.7 bits (86), Expect = 4e-04
Identities = 28/102 (27%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Frame = +3
Query: 24 AQCKKLQHLTIATLATQ--EKCIPYSVLLEELDIKNVRDLEDLIIEAIYADIIHGKLDQQ 197
A +K++ LTIA+LATQ + Y + + L I + ++E II+ I A ++ G++ Q
Sbjct: 278 AIARKMKLLTIASLATQAPNNTLSYGDVAKSLKI-DENEVELWIIDVIRAGLVEGRMSQL 336
Query: 198 CKRVEVDVALGRDARLEDASAIADVLADWCNSCEAVLNSVDR 323
K + + + R + A+ + LA W +S +L +++
Sbjct: 337 TKTLSIHRSSYRVFGKHEWVALHEKLAKWGSSLRYMLQVMEQ 378
>SPAC1B3.02c |||transcription elongation factor, Elf1
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 26.6 bits (56), Expect = 1.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 255 SAIADVLADWCNSCEAVLN 311
SA DV +DW ++C+AV N
Sbjct: 64 SAPIDVYSDWIDACDAVAN 82
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.8 bits (54), Expect = 3.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 209 DTFALLVQFPVDYICIDSFNYKIF*ISNILNV 114
D F VQ +I +DSFN + +S ILN+
Sbjct: 1096 DVFLCFVQKTSKFISLDSFNTILTALSTILNL 1127
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 4.1
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = +3
Query: 72 QEKCIPYSVLLEELDIKNVRDLEDLIIEAIYADIIHGKLDQQCKRVEVDVALGRDARLED 251
Q+ Y + E LD KNV D D IEA LD++ +R+E + D +ED
Sbjct: 423 QDPSWKYDRMPELLDGKNVADFVDPEIEAKLL-----ALDEEEERLEREGYYDSDQEIED 477
Query: 252 A 254
A
Sbjct: 478 A 478
>SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase
Ppk34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 25.4 bits (53), Expect = 4.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 63 LATQEKCIPYSVLLEELDIKNVRDLEDLI 149
+ QEK PY + +ELD+ V D E+++
Sbjct: 106 IRNQEKKDPYYYIRKELDVLKVLDHENVV 134
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 25.0 bits (52), Expect = 5.4
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = +3
Query: 246 EDASAIADVLADWCNSCEAV 305
+D + D A WC C+A+
Sbjct: 17 QDKLVVVDFFATWCGPCKAI 36
>SPBC215.03c |csn1||COP9/signalosome complex subunit
Csn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 24.6 bits (51), Expect = 7.2
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +3
Query: 84 IPYSVLLEELDIKNVRDLEDLIIEAIYADIIHGKLDQQCKRVEVDVALGRDARLEDASAI 263
+P+S + + I +E ++E I A ++GK+D KRV ++ + ED I
Sbjct: 322 LPFSKIAVDFHIDE-NFIEKNLLEIIEAKKLNGKVDSLQKRVYIEPS-SEPENFEDIKNI 379
Query: 264 A 266
A
Sbjct: 380 A 380
>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 299
Score = 24.6 bits (51), Expect = 7.2
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +3
Query: 30 CKKLQHLTIATLATQEKCIP---YSVLLEELD 116
CK+LQ L + Q KCI Y V+L++++
Sbjct: 6 CKRLQKLAPKSPENQSKCISRLRYMVMLDQVE 37
>SPBC1773.03c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 24.2 bits (50), Expect = 9.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -3
Query: 84 CISLVLQVWQLLNVGASC 31
C+ L+LQ WQL+ C
Sbjct: 121 CLKLILQYWQLVGEKQRC 138
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 24.2 bits (50), Expect = 9.5
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +3
Query: 267 DVLADWCNSCEAV 305
D ADWC C+A+
Sbjct: 25 DCYADWCGPCKAI 37
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,708,152
Number of Sequences: 5004
Number of extensions: 30957
Number of successful extensions: 102
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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