Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_E21
         (452 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   2.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   3.6  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   8.3  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   8.3  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 338 QSSQTKIPSASTGYRTRDIVH 400
           +S++ KIP +S   + R+IVH
Sbjct: 207 KSNEKKIPKSSGWRKLRNIVH 227


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 368 STGYRTRDIVHKENS 412
           S GY  RD+++K NS
Sbjct: 150 SFGYTKRDVIYKWNS 164


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +1

Query: 259 PLQMFWRIGATLVKPSSTQSTGTYRGPIITNKDPFGI 369
           PLQ  ++IG     P     TG  +  ++    P G+
Sbjct: 192 PLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGL 228


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +1

Query: 259 PLQMFWRIGATLVKPSSTQSTGTYRGPIITNKDPFGI 369
           PLQ  ++IG     P     TG  +  ++    P G+
Sbjct: 249 PLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGL 285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,285
Number of Sequences: 438
Number of extensions: 2034
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)