Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_E20
         (155 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   0.80 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   1.4  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         19   7.4  
DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex det...    19   7.4  
DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex det...    19   7.4  
DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex det...    19   7.4  
DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex det...    19   7.4  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    19   7.4  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    19   7.4  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    19   7.4  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    19   7.4  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    19   7.4  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    19   7.4  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    19   7.4  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.8 bits (44), Expect = 0.80
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -3

Query: 138 RPGKCGSKEGH 106
           RPG+CG ++G+
Sbjct: 178 RPGQCGREDGY 188


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 31  RHHAAQQTECSSVLRMIYLLACTFWMALF*AAL 129
           R H A++ + S+ L +I       W+  F  AL
Sbjct: 361 RFHLAKERKASTTLGIIMSAFIVCWLPFFVLAL 393


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +1

Query: 4   CRNSARGIFRHHAAQQTECSSVLRMI 81
           C N  R + RH+     +    L+MI
Sbjct: 329 CWNEHRTLERHNIRTVAQSDETLQMI 354


>DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 92  PVPSGWPSFEPHFPGR 139
           PVP  +P +  +FP R
Sbjct: 112 PVPVPFPVYYGNFPPR 127


>DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 92  PVPSGWPSFEPHFPGR 139
           PVP  +P +  +FP R
Sbjct: 112 PVPVPFPVYYGNFPPR 127


>DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 92  PVPSGWPSFEPHFPGR 139
           PVP  +P +  +FP R
Sbjct: 112 PVPVPFPVYYGNFPPR 127


>DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 92  PVPSGWPSFEPHFPGR 139
           PVP  +P +  +FP R
Sbjct: 112 PVPVPFPVYYGNFPPR 127


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 92  PVPSGWPSFEPHFPGR 139
           PVP  +P +  +FP R
Sbjct: 345 PVPVPFPVYYGNFPPR 360


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 92  PVPSGWPSFEPHFPGR 139
           PVP  +P +  +FP R
Sbjct: 345 PVPVPFPVYYGNFPPR 360


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 92  PVPSGWPSFEPHFPGR 139
           PVP  +P +  +FP R
Sbjct: 345 PVPVPFPVYYGNFPPR 360


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 92  PVPSGWPSFEPHFPGR 139
           PVP  +P +  +FP R
Sbjct: 345 PVPVPFPVYYGNFPPR 360


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 92  PVPSGWPSFEPHFPGR 139
           PVP  +P +  +FP R
Sbjct: 334 PVPVPFPVYYGNFPPR 349


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +1

Query: 4   CRNSARGIFRHHAAQQTECSSVLRMI 81
           C N  R + RH+     +    L+MI
Sbjct: 329 CWNEHRTLERHNIRTVAQSDETLQMI 354


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +1

Query: 4   CRNSARGIFRHHAAQQTECSSVLRMI 81
           C N  R + RH+     +    L+MI
Sbjct: 329 CWNEHRTLERHNIRTVAQSDETLQMI 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,328
Number of Sequences: 438
Number of extensions: 796
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 31
effective length of database: 132,765
effective search space used:  2655300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)