Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_E18
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    28   0.55 
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    25   3.9  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         25   5.2  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    25   6.8  

>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 28.3 bits (60), Expect = 0.55
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -3

Query: 403 TVSEVIIP--VTQFIHFLKKIADKRAEPRAYSWSSIKHLLKQFIIIQIYDNK 254
           T SE  +P  +  +I+ L  I D+   P    ++ IKH  ++F+  +IY NK
Sbjct: 261 TSSETDVPKNINDYIYLL--IDDRFVPPDRVYYTDIKHHFRKFLYEKIYMNK 310


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -3

Query: 358 LKKIADKRAEPRAYSWSSIKHLLKQFIIIQIYDNKSRII*NMK 230
           L+ I D    P  +SW  +K+L    ++  + + KSR +   K
Sbjct: 485 LEVIYDMMGTPDVHSWPEVKNLPWYELLKPVEEKKSRFVETFK 527


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 340 KRAEPRAYSWSSIKHL 293
           +R  P AY W+ IKHL
Sbjct: 669 RRRFPNAYGWTVIKHL 684


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 313 WSSIKHLLKQFIIIQIYDNKSRII 242
           WS + HL+K   +   Y+N S+++
Sbjct: 288 WSDLAHLVKNRKVYMYYENGSQLL 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,640,852
Number of Sequences: 5004
Number of extensions: 29637
Number of successful extensions: 67
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)