Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_E18
         (441 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0367 - 33413530-33413710,33414347-33414681,33414908-334150...    27   5.1  
05_02_0026 + 5716467-5716655,5716833-5718797                           27   6.7  

>03_06_0367 -
           33413530-33413710,33414347-33414681,33414908-33415023,
           33415107-33415235,33415657-33415723,33415780-33415854,
           33416054-33416149,33416404-33416592
          Length = 395

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +1

Query: 22  SDQVPL----GRLLPGCPVTLVLQVCIVTLISFILP 117
           S Q+PL    GR+L G P  LV++ C   L  ++LP
Sbjct: 245 SPQLPLIVFVGRVLVGIPTILVVKFCSKALSKWLLP 280


>05_02_0026 + 5716467-5716655,5716833-5718797
          Length = 717

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 330 SARLSAIFFRKCINCVTGIITSDTVESYFDI 422
           S  + AIF + C+   T +I  +  + YF +
Sbjct: 185 SPEMQAIFVKSCVEMTTQVIVDEIGDGYFSV 215


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,535,139
Number of Sequences: 37544
Number of extensions: 177308
Number of successful extensions: 370
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)