Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_E18
         (441 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ278501-1|CAB95730.1|   82|Homo sapiens MHC class I antigen pro...    29   7.1  
BC064577-1|AAH64577.1|  558|Homo sapiens CPNE7 protein protein.        29   9.4  
BC035334-1|AAH35334.1|  558|Homo sapiens copine VII protein.           29   9.4  
AJ133799-1|CAB61446.1|  633|Homo sapiens copine VII protein prot...    29   9.4  
AJ133798-1|CAB61431.1|  633|Homo sapiens copine VII protein prot...    29   9.4  

>AJ278501-1|CAB95730.1|   82|Homo sapiens MHC class I antigen
           protein.
          Length = 82

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 376 TQFIHFLKKIADKRAEPRAYSWS 308
           TQF+ F    A +R EPRA  WS
Sbjct: 55  TQFVRFDSDAASQRMEPRARGWS 77


>BC064577-1|AAH64577.1|  558|Homo sapiens CPNE7 protein protein.
          Length = 558

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +1

Query: 4   RGRPPRSDQVPLGRLLPGC 60
           RG PPRS  VP G   PGC
Sbjct: 538 RGLPPRSLGVPAGEASPGC 556


>BC035334-1|AAH35334.1|  558|Homo sapiens copine VII protein.
          Length = 558

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +1

Query: 4   RGRPPRSDQVPLGRLLPGC 60
           RG PPRS  VP G   PGC
Sbjct: 538 RGLPPRSLGVPAGEASPGC 556


>AJ133799-1|CAB61446.1|  633|Homo sapiens copine VII protein
           protein.
          Length = 633

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +1

Query: 4   RGRPPRSDQVPLGRLLPGC 60
           RG PPRS  VP G   PGC
Sbjct: 613 RGLPPRSLGVPAGEASPGC 631


>AJ133798-1|CAB61431.1|  633|Homo sapiens copine VII protein
           protein.
          Length = 633

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +1

Query: 4   RGRPPRSDQVPLGRLLPGC 60
           RG PPRS  VP G   PGC
Sbjct: 613 RGLPPRSLGVPAGEASPGC 631


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,685,254
Number of Sequences: 237096
Number of extensions: 1013746
Number of successful extensions: 4374
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4374
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3602345922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)