Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_E18
         (441 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66500-2|CAA91304.2|  500|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p...    28   2.6  
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr...    28   2.6  
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr...    28   2.6  
U58754-5|AAB00672.2|  330|Caenorhabditis elegans Serpentine rece...    28   2.6  
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.      28   2.6  
AL110487-9|CAB54435.1|  626|Caenorhabditis elegans Hypothetical ...    28   3.5  
AF031836-1|AAC13672.1|  626|Caenorhabditis elegans GLY5b protein.      28   3.5  
Z92782-3|CAB07189.2|  326|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>Z66500-2|CAA91304.2|  500|Caenorhabditis elegans Hypothetical
           protein T05C12.2 protein.
          Length = 500

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 13  PPRSDQVPLGRLLPGCPVTLVLQVCIVTLISFILPSRRVQTN 138
           PP+S  VP+      C + LV   C+ T+++  L  R+ +T+
Sbjct: 312 PPQSQSVPILAAFFSCCLMLVACSCVFTVLTLSLHHRKPETH 353


>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
            protein C47D12.1c protein.
          Length = 4053

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 335  PLVSYFLQKMYKLCHG 382
            P+  Y ++K++KLCHG
Sbjct: 1171 PMCKYLMEKVFKLCHG 1186


>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
            C47D12.1b protein.
          Length = 4061

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 335  PLVSYFLQKMYKLCHG 382
            P+  Y ++K++KLCHG
Sbjct: 1177 PMCKYLMEKVFKLCHG 1192


>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
            C47D12.1a protein.
          Length = 4064

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 335  PLVSYFLQKMYKLCHG 382
            P+  Y ++K++KLCHG
Sbjct: 1177 PMCKYLMEKVFKLCHG 1192


>U58754-5|AAB00672.2|  330|Caenorhabditis elegans Serpentine
           receptor, class sx protein14 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +1

Query: 172 REFYYY*MSRDNCLTVIIFVSYFKLYVIYYR 264
           R ++YY M+  + LTVI +VS F L  IY++
Sbjct: 171 RSYWYYVMTAFSVLTVIFYVSAFAL--IYFK 199


>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
          Length = 4064

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 335  PLVSYFLQKMYKLCHG 382
            P+  Y ++K++KLCHG
Sbjct: 1177 PMCKYLMEKVFKLCHG 1192


>AL110487-9|CAB54435.1|  626|Caenorhabditis elegans Hypothetical
           protein Y39E4B.12a protein.
          Length = 626

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 282 NCFNKCFIDDQLYARGSARLSAIFFRKCINCVTG 383
           N + + F+  +  A+G  R SA+   +C++C+ G
Sbjct: 475 NIYPELFVPGESVAKGEVRNSAVQPARCLDCMVG 508


>AF031836-1|AAC13672.1|  626|Caenorhabditis elegans GLY5b protein.
          Length = 626

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 282 NCFNKCFIDDQLYARGSARLSAIFFRKCINCVTG 383
           N + + F+  +  A+G  R SA+   +C++C+ G
Sbjct: 475 NIYPELFVPGESVAKGEVRNSAVQPARCLDCMVG 508


>Z92782-3|CAB07189.2|  326|Caenorhabditis elegans Hypothetical
           protein F14F8.4 protein.
          Length = 326

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 409 LSTVSEVIIPVTQFIHFLKKIADK 338
           LS +S  I+PV Q++H LK+  +K
Sbjct: 25  LSIISYSILPVYQYLHNLKRFREK 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,221,144
Number of Sequences: 27780
Number of extensions: 171054
Number of successful extensions: 395
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)