Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_E16
(494 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1552 - 34355544-34355613,34356099-34356282,34356829-343569... 33 0.13
07_03_1061 + 23651404-23651625,23651764-23652954 32 0.22
11_06_0497 + 24337772-24337993,24338042-24338083,24338176-24339357 32 0.29
03_05_0126 + 21066911-21067321 32 0.29
10_08_0338 + 16916429-16916650,16916728-16917900 31 0.38
08_01_0876 - 8598664-8599374 31 0.51
12_01_0849 + 7948693-7948996,7949829-7950610 30 0.89
08_02_0181 + 13923658-13923661,13925518-13925681,13925879-139259... 29 2.1
01_01_0727 - 5675215-5675277,5675523-5675621,5676645-5676782,567... 28 3.6
03_06_0105 + 31675083-31675313,31676171-31676815 28 4.7
03_02_0613 - 9848514-9848539,9848942-9849200,9849326-9849365,984... 27 6.3
>04_04_1552 -
34355544-34355613,34356099-34356282,34356829-34356922,
34357006-34357124,34357623-34357689,34359185-34359265,
34359267-34359413
Length = 253
Score = 33.1 bits (72), Expect = 0.13
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = -1
Query: 239 ARTRNRRSPGCPTADPRSRRGLRARPEPPCRRGP 138
A T +RR P P R R G RAR PP R P
Sbjct: 6 AATAHRRKPSAPRLTVRHRLGYRARLAPPVRHTP 39
>07_03_1061 + 23651404-23651625,23651764-23652954
Length = 470
Score = 32.3 bits (70), Expect = 0.22
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 8 VTFESEQVVNELLKTPKQTIGGKEVDVKRATPK 106
+T++SE V++ L + GK V+VKRA PK
Sbjct: 152 ITYDSEDAVDKALHKNFHELNGKMVEVKRAVPK 184
>11_06_0497 + 24337772-24337993,24338042-24338083,24338176-24339357
Length = 481
Score = 31.9 bits (69), Expect = 0.29
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 8 VTFESEQVVNELLKTPKQTIGGKEVDVKRATPK 106
+T++SE V++ L + GK V+VKRA PK
Sbjct: 166 ITYDSEDAVDKALFKTFHELNGKMVEVKRAVPK 198
>03_05_0126 + 21066911-21067321
Length = 136
Score = 31.9 bits (69), Expect = 0.29
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -1
Query: 251 HSLPARTRNRRSPGCPTADPRSRRGLRARPEPPCRRGPRARSYPRAHQAWA 99
H + A R PG P RGL ++ E RRGPR +P H+ W+
Sbjct: 49 HRVIACRGKLRQPGAPVR--AGARGLPSK-EQRLRRGPRLERFPVRHEKWS 96
>10_08_0338 + 16916429-16916650,16916728-16917900
Length = 464
Score = 31.5 bits (68), Expect = 0.38
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 8 VTFESEQVVNELLKTPKQTIGGKEVDVKRATPK 106
+TF++E V+ +L + GK V+VKRA P+
Sbjct: 174 ITFDAEDAVDRVLHKTFHDLSGKMVEVKRALPR 206
>08_01_0876 - 8598664-8599374
Length = 236
Score = 31.1 bits (67), Expect = 0.51
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -1
Query: 233 TRNRRSPGCPTADPRSRRGLRARPEPPCRRGPRAR 129
T + +P P P+SRRG R P RRGPR R
Sbjct: 159 TMDGAAPLLPETSPKSRRGRRGGRRSP-RRGPRTR 192
>12_01_0849 + 7948693-7948996,7949829-7950610
Length = 361
Score = 30.3 bits (65), Expect = 0.89
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -1
Query: 245 LPARTRNRRSPGCPTADPRSRRGLRARPEP 156
LP R R PG P+ P RR R+RP P
Sbjct: 254 LPRRRRVALHPGFPSVSPERRRLRRSRPPP 283
>08_02_0181 +
13923658-13923661,13925518-13925681,13925879-13925978,
13926072-13926244,13926486-13927016
Length = 323
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 8 VTFESEQVVNELLKTPKQTIGGKEVDVKRATPK 106
+TF VV+ +++ I GKEV++KR PK
Sbjct: 34 ITFADPAVVDRVIED-NHVINGKEVEIKRTIPK 65
>01_01_0727 -
5675215-5675277,5675523-5675621,5676645-5676782,
5676878-5676995,5678177-5678520
Length = 253
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -1
Query: 194 PRSRRGLRARPEPPCRRGPRARSYPRAHQAW 102
PR+ R P RR PRAR PR+ Q W
Sbjct: 35 PRAPRPEPGDGPPQERRKPRARPRPRSRQPW 65
>03_06_0105 + 31675083-31675313,31676171-31676815
Length = 291
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 8 VTFESEQVVNELLKTPKQTIGGKEVDVKRATPK 106
++F+S + V ++L + G++V+VK A PK
Sbjct: 158 ISFDSHEAVCKILLNRFHNLNGRDVEVKIAVPK 190
>03_02_0613 -
9848514-9848539,9848942-9849200,9849326-9849365,
9849952-9850117,9850228-9850756
Length = 339
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -1
Query: 200 ADPRSRRGLRARPEPPCRRGPRARSYPRAH 111
A PR++ RP PP GP A + P H
Sbjct: 141 AKPRAQPPHLLRPSPPATPGPHAPALPSPH 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,698,265
Number of Sequences: 37544
Number of extensions: 80950
Number of successful extensions: 434
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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