Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_E16
(494 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 32 0.20
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 32 0.20
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 32 0.20
Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical p... 31 0.35
Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical pr... 31 0.35
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 31 0.46
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 31 0.46
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 31 0.46
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 31 0.46
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 31 0.46
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 30 0.80
Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical pr... 30 1.1
AF026210-5|AAB71287.1| 632|Caenorhabditis elegans Hypothetical ... 27 7.5
AF026210-4|AAT81192.1| 627|Caenorhabditis elegans Hypothetical ... 27 7.5
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 32.3 bits (70), Expect = 0.20
Identities = 19/40 (47%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -1
Query: 242 PARTRNRR-SPGCPTADPRSRRGLRARPEPPCRRGPRARS 126
P+ R RR SP P D R R G R R RR P ARS
Sbjct: 89 PSPPRRRRPSPSPPRRDRRDRSGSRQRRRASPRRSPAARS 128
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = -1
Query: 242 PARTRNRRSPGCPTADPRSRRGLRARPEPPCRRGPRAR 129
PAR RSP + PR R R RP P PR R
Sbjct: 58 PARGGRSRSPIRRGSPPRGARADRDRPMRPSPSPPRRR 95
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 32.3 bits (70), Expect = 0.20
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 8 VTFESEQVVNELLKTPKQTIGGKEVDVKRATPK 106
+ FE E+ ++ KQT G +E DVK+A P+
Sbjct: 156 IVFEEEESADKASSQTKQTFGTRECDVKKAVPQ 188
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 32.3 bits (70), Expect = 0.20
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 8 VTFESEQVVNELLKTPKQTIGGKEVDVKRATPK 106
+ FE E+ ++ KQT G +E DVK+A P+
Sbjct: 156 IVFEEEESADKASSQTKQTFGTRECDVKKAVPQ 188
>Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical
protein F02E9.4b protein.
Length = 1507
Score = 31.5 bits (68), Expect = 0.35
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -1
Query: 218 SPGCPTADPRSRRGLRARPEPPCRRGPRARSYPRAHQAWAWL 93
S GCP +PR ++G R + P R+ P PR +A A+L
Sbjct: 254 SAGCPQREPRQQQGGRRQNRPGRRKKPEGP--PRVDEALAYL 293
>Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical
protein F02E9.4a protein.
Length = 1505
Score = 31.5 bits (68), Expect = 0.35
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -1
Query: 218 SPGCPTADPRSRRGLRARPEPPCRRGPRARSYPRAHQAWAWL 93
S GCP +PR ++G R + P R+ P PR +A A+L
Sbjct: 254 SAGCPQREPRQQQGGRRQNRPGRRKKPEGP--PRVDEALAYL 293
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 31.1 bits (67), Expect = 0.46
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 8 VTFESEQVVNELLKTPKQTIGGKEVDVKRATPKPD 112
VTF + V+ +K I GK VD KRA P+ D
Sbjct: 69 VTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDD 103
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 31.1 bits (67), Expect = 0.46
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 8 VTFESEQVVNELLKTPKQTIGGKEVDVKRATPKPD 112
VTF + V+ +K I GK VD KRA P+ D
Sbjct: 31 VTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDD 65
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 31.1 bits (67), Expect = 0.46
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 8 VTFESEQVVNELLKTPKQTIGGKEVDVKRATPKPD 112
VTF + V+ +K I GK VD KRA P+ D
Sbjct: 31 VTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDD 65
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 31.1 bits (67), Expect = 0.46
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 8 VTFESEQVVNELLKTPKQTIGGKEVDVKRATPKPD 112
VTF + V+ +K I GK VD KRA P+ D
Sbjct: 69 VTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDD 103
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 31.1 bits (67), Expect = 0.46
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 8 VTFESEQVVNELLKTPKQTIGGKEVDVKRATPKPD 112
VTF + V+ +K I GK VD KRA P+ D
Sbjct: 69 VTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDD 103
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 30.3 bits (65), Expect = 0.80
Identities = 20/45 (44%), Positives = 24/45 (53%)
Frame = -1
Query: 248 SLPARTRNRRSPGCPTADPRSRRGLRARPEPPCRRGPRARSYPRA 114
S P R R RSP + P R+ R+R PP RR R+RS P A
Sbjct: 116 SPPRRRRISRSPVRRSRSPPRRQVSRSRSPPP-RRQQRSRSPPPA 159
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = -1
Query: 230 RNRRSPGCPTADPRSRRGLRARPEPPCRRGPRARSYPRAHQ 108
R RRSP P SR +R PP R+ R+RS P Q
Sbjct: 110 RTRRSPSPPRRRRISRSPVRRSRSPPRRQVSRSRSPPPRRQ 150
>Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical
protein ZC434.2 protein.
Length = 194
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 194 PRSRRGLRARPEPPCRRGPRARSYPRAHQAW 102
P+ +RG +ARP+ R PR+R+ H AW
Sbjct: 101 PKPQRGSKARPQKQKR--PRSRTLTAVHDAW 129
>AF026210-5|AAB71287.1| 632|Caenorhabditis elegans Hypothetical
protein F48A11.5a protein.
Length = 632
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 218 SPGCPTADPRSRRGLRARPEPPCRRGP 138
S G +A SRRG RA P PP + P
Sbjct: 159 SSGSSSASFSSRRGTRANPVPPPNQEP 185
>AF026210-4|AAT81192.1| 627|Caenorhabditis elegans Hypothetical
protein F48A11.5b protein.
Length = 627
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 218 SPGCPTADPRSRRGLRARPEPPCRRGP 138
S G +A SRRG RA P PP + P
Sbjct: 154 SSGSSSASFSSRRGTRANPVPPPNQEP 180
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,223,030
Number of Sequences: 27780
Number of extensions: 56657
Number of successful extensions: 224
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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