Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_E15
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 111 6e-26
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 111 6e-26
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam... 29 0.44
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce... 27 1.8
SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar... 27 3.1
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 27 3.1
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 25 7.2
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 25 7.2
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 9.5
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 25 9.5
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 25 9.5
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 111 bits (268), Expect = 6e-26
Identities = 50/70 (71%), Positives = 59/70 (84%)
Frame = +1
Query: 46 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 225
MGI+RD HKR ATG KRA RKKRK+ELGR +NT++GP+RIH VR RGGN K+RALRL
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60
Query: 226 DTGNFAWGSE 255
D+GNF+WGSE
Sbjct: 61 DSGNFSWGSE 70
Score = 48.8 bits (111), Expect = 7e-07
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +3
Query: 315 NWCVPXXXLVKNAIVVVDATPFRQWYESHYLLPLGR--KKGAKLTEAEEAIINKKRSQKT 488
N V L K+AIV +DA PFR WYE+HY + +G KK + + +K S +
Sbjct: 88 NELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMGSKGKKATSTPNPKSKHVQRKHSARL 147
Query: 489 GEEVPEQAAPVQ 524
G+ + A Q
Sbjct: 148 GDSKVDSALETQ 159
Score = 45.6 bits (103), Expect = 6e-06
Identities = 22/44 (50%), Positives = 29/44 (65%)
Frame = +1
Query: 481 KRLAKKYLSRQRLSKVEGGLEEQFHTGRLLACVASRPGQCGRAE 612
K + +K+ +R SKV+ LE QF GRL A V+SRPGQ GR +
Sbjct: 137 KHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPGQSGRCD 180
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 111 bits (268), Expect = 6e-26
Identities = 50/70 (71%), Positives = 59/70 (84%)
Frame = +1
Query: 46 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 225
MGI+RD HKR ATG KRA RKKRK+ELGR +NT++GP+RIH VR RGGN K+RALRL
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60
Query: 226 DTGNFAWGSE 255
D+GNF+WGSE
Sbjct: 61 DSGNFSWGSE 70
Score = 48.4 bits (110), Expect = 9e-07
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Frame = +3
Query: 315 NWCVPXXXLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEA---EEAIINKKRSQK 485
N V L K+AIV +DA PFR WYE+HY + +G KG K T + + +K S +
Sbjct: 88 NELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKATATPTPKSKHVQRKHSAR 146
Query: 486 TGEEVPEQAAPVQ 524
G+ + A Q
Sbjct: 147 LGDSKVDSALETQ 159
Score = 45.6 bits (103), Expect = 6e-06
Identities = 22/44 (50%), Positives = 29/44 (65%)
Frame = +1
Query: 481 KRLAKKYLSRQRLSKVEGGLEEQFHTGRLLACVASRPGQCGRAE 612
K + +K+ +R SKV+ LE QF GRL A V+SRPGQ GR +
Sbjct: 137 KHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPGQSGRCD 180
>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 29.5 bits (63), Expect = 0.44
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 395 FIPLPERCGIHHDNSILYQGXXWYAPI 315
F+P PE C I+H+ I Q + PI
Sbjct: 477 FLPAPEECNIYHNEHIQVQEDNYLCPI 503
>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 324
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 148 WQPGDLTHTSSSYEWAHVC 92
W PG SS++W HVC
Sbjct: 278 WSPGKYDVFGSSHQWFHVC 296
>SPAC16E8.17c |||succinate-CoA ligase alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +2
Query: 29 FLTQPRWVSVVIIGIRGGLRAANVRPFVRRGSMS*VARLPTLSLVPNAS 175
FL P +++IG GG + F+R + S P +S + A+
Sbjct: 228 FLDDPNTQGIILIGEIGGSAEEDAAEFIRAANASRSTPKPVVSFIAGAT 276
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 26.6 bits (56), Expect = 3.1
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +1
Query: 58 RDHWHKRRATGGKRAPIRKKRKY--ELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDT 231
RD +K + G K+ + EL +N + Q+ L+ S T YRA+ LDT
Sbjct: 1083 RDRLYKSQLIGRVLDDTTKENRLLKELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDT 1142
Query: 232 GN 237
G+
Sbjct: 1143 GD 1144
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 452 LSLSELGTFLPSEW 411
LSL+E GTFL EW
Sbjct: 1554 LSLNECGTFLQKEW 1567
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +1
Query: 31 SDPAKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAAN 150
S+ K G + RRA A RKK K + GRP +N
Sbjct: 2 SETTKSGSKKSGQTSRRAIHSCLACRRKKLKCDHGRPCSN 41
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 96 FAARSPPLMPMITTDTHLGWVRKEK 22
F+ + L+P+ITT THL V +K
Sbjct: 1201 FSEKYTQLIPVITTYTHLSEVENKK 1225
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 402 YLLPLGRKKGAKLTE 446
Y+LPLGRK K TE
Sbjct: 492 YILPLGRKTARKCTE 506
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +1
Query: 61 DHWHKRRATGGKRAPIRKKRKYE 129
D W +A G +PIR+ ++Y+
Sbjct: 758 DEWKASKAFGANDSPIRENKRYK 780
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,906,452
Number of Sequences: 5004
Number of extensions: 61352
Number of successful extensions: 163
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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