Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_E15
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 135 3e-32
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 107 6e-24
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815... 31 0.60
09_03_0103 - 12383585-12384700 30 1.4
05_03_0652 + 16606987-16607443,16607542-16607652,16609317-16609411 30 1.4
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 30 1.8
02_05_0637 + 30543158-30543895 30 1.8
05_01_0573 - 5083030-5083151,5084639-5084738,5084790-5084829,508... 29 2.4
11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861 29 3.2
06_03_1165 - 28106604-28106915 29 3.2
03_01_0644 - 4719954-4720022,4720445-4720912,4721009-4721312,472... 29 4.2
03_01_0438 + 3399203-3399297,3399389-3399480,3399638-3399750,340... 29 4.2
02_04_0064 - 19375497-19375580,19375659-19375733,19376359-193765... 29 4.2
11_06_0133 + 20443871-20445122,20445642-20446625,20446776-20447155 28 5.6
06_01_0913 - 7042230-7043332,7043420-7043621 28 7.4
05_07_0165 + 28107093-28108457 28 7.4
03_02_0922 - 12417328-12417816,12417929-12418399,12418568-124186... 28 7.4
09_04_0391 + 17248698-17248790,17248913-17249851,17249942-17250223 27 9.8
09_04_0390 + 17241546-17241638,17241715-17242653,17242753-17243037 27 9.8
08_02_0987 + 23334208-23334297,23334422-23335360,23335449-23335730 27 9.8
02_05_0753 + 31510269-31510473,31510989-31511035,31511123-315111... 27 9.8
01_01_0660 + 5029070-5029177,5029303-5029398,5029494-5029556,502... 27 9.8
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 135 bits (326), Expect = 3e-32
Identities = 88/202 (43%), Positives = 117/202 (57%), Gaps = 13/202 (6%)
Frame = +1
Query: 46 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALR 222
MGISRD HKRRATGGK+ RKKRKYELGR ANTKL + + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALR 60
Query: 223 LDTGNFAWGSECSTRXDSYY*WLFINAF*Q*IGAYQXXPW*RML-------LSWWMPHLS 381
LDTGN++WGSE TR ++ NA + Q ++ W++ H
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDVVY-NASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYG 119
Query: 382 ---GSGMKATTCCH--SEGRKVPSSLRLRKPS*TKNAVKRLAKKYLSRQRLSKVEGGLEE 546
G KA +EG++ ++ K S + V++L K RQ+ ++ +EE
Sbjct: 120 VDIGRKKKAPAAKKDAAEGQEGEAATEEAKKS--NHVVRKLEK----RQQTRTLDSHIEE 173
Query: 547 QFHTGRLLACVASRPGQCGRAE 612
QF +GRLLAC++SRPGQCGRA+
Sbjct: 174 QFGSGRLLACISSRPGQCGRAD 195
Score = 50.8 bits (116), Expect = 9e-07
Identities = 24/48 (50%), Positives = 31/48 (64%)
Frame = +3
Query: 315 NWCVPXXXLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEAEEA 458
N V LVK+AIV VDA PF+QWY +HY + +GRKK A + + A
Sbjct: 89 NELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAA 136
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 107 bits (258), Expect = 6e-24
Identities = 52/75 (69%), Positives = 58/75 (77%), Gaps = 1/75 (1%)
Frame = +1
Query: 46 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALR 222
MGISRD HKRRATGGK+ RKKRKYELGR ANTKL + + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60
Query: 223 LDTGNFAWGSECSTR 267
LDTGN++WGSE TR
Sbjct: 61 LDTGNYSWGSEAVTR 75
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/42 (52%), Positives = 32/42 (76%)
Frame = +1
Query: 487 LAKKYLSRQRLSKVEGGLEEQFHTGRLLACVASRPGQCGRAE 612
+ +K RQ+ ++ +EEQF +GRLLAC++SRPGQCGRA+
Sbjct: 171 VVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRAD 212
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/51 (50%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Frame = +3
Query: 315 NWCVPXXXLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKLT--EAEEAI 461
N V LVK+AIV VDA PF+QWY +HY + +GRKK A +AE A+
Sbjct: 89 NELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAEHAL 139
>01_06_0213 + 27580635-27581105,27581206-27581298,27581376-27581540,
27581640-27581862,27582329-27582429,27582666-27582713,
27583086-27583172,27583745-27583879,27583985-27584140,
27585336-27585545,27585641-27586351,27586429-27586974,
27587872-27588495,27588595-27588699,27590460-27590711,
27590939-27591766
Length = 1584
Score = 31.5 bits (68), Expect = 0.60
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +3
Query: 429 GAKLTEAEEAIINKKRSQKTGEEVPEQAAPVQGRGWSGGAIPH 557
G++L ++E+ N++ Q EE EQ P RG+SGG+ PH
Sbjct: 1470 GSQLDQSED---NEENGQPMDEEYDEQV-PDYSRGYSGGSRPH 1508
>09_03_0103 - 12383585-12384700
Length = 371
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = -1
Query: 554 WNCSSRPPSTLDRRCLLRYFFASLLTAFFVYDGFLSLSELGTFLPSEWQQVVAFIPLPER 375
W+C PST + + + Y A +D F E+ T W+Q+ +F P
Sbjct: 150 WHCLGFCPSTKEHKVVHFYLGAH-------FDSFNVCCEIFTIGDKSWRQIGSFHGAPTD 202
Query: 374 CGIHHDNSILY 342
G+H + ++ Y
Sbjct: 203 RGVHVNGAVYY 213
>05_03_0652 + 16606987-16607443,16607542-16607652,16609317-16609411
Length = 220
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = -1
Query: 602 PH*PGRLATHANSRPVWNCSSRPPSTLDRRCLLRYFFASLLTAFFVYDGFLSLSELGTFL 423
P+ PG LA + R R + R C++ F L+ FFV+DGFL++ + F
Sbjct: 163 PNRPGYLAPYKGQRYHVPEFWRGSTPTVRYCIIHLFG---LSCFFVFDGFLTVKKYHIFS 219
Query: 422 P 420
P
Sbjct: 220 P 220
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Frame = +1
Query: 118 RKYELGRPAANTKLGPQRIHLVRSR----GGNTKYRALRLDTGN-FAWGS 252
R+ +LG P+ +T+ P+R+ +++R K+ A DTG F WGS
Sbjct: 271 REGQLGYPSVDTQPTPRRVSSLKARIISVAAANKHSAAVADTGEVFTWGS 320
>02_05_0637 + 30543158-30543895
Length = 245
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = -2
Query: 610 RRDRTDRADSPHMLTAVQCGIAPPDHPLPWTGAACSGTSSPV 485
RR +D + P A Q + P PLP G+ACSG ++PV
Sbjct: 107 RRSTSDLSSFP----AAQASASAPTSPLP--GSACSGAATPV 142
>05_01_0573 -
5083030-5083151,5084639-5084738,5084790-5084829,
5085122-5085567
Length = 235
Score = 29.5 bits (63), Expect = 2.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 525 GRGWSGGAIPHWTAVS 572
G GW GG+ HW++VS
Sbjct: 65 GNGWQGGSTDHWSSVS 80
>11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861
Length = 158
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +1
Query: 73 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTK 207
KRR GG+RA R+K + E GR A + R RGG +
Sbjct: 45 KRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 89
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 73 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQRI-HLVRSRGGNTKYRALR 222
KRR GG+RA R+K + E GR A + + R RGG + R R
Sbjct: 81 KRRRGGGRRAAGRRKEEEEAGRRKAGEETRRRGAGRRKRRRGGRRRRRRRR 131
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 73 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTK 207
+RR GG+RA R+K + E GR A + R RGG +
Sbjct: 9 RRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 53
>06_03_1165 - 28106604-28106915
Length = 103
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +3
Query: 423 KKGAKLTEAEEAIINKKRSQKTGEEVPEQAAPVQGRGWSGGAIPHWTAVSMCGESARSVR 602
K A L + A+ + + ++V +A PV +GGA + + CG +ARS R
Sbjct: 26 KDQAGLCRWDYALRSLYQRAAAAKQVTGRAVPVSLSSQTGGAAASSSPAAACGRAARSKR 85
Query: 603 S 605
S
Sbjct: 86 S 86
>03_01_0644 -
4719954-4720022,4720445-4720912,4721009-4721312,
4722321-4722745
Length = 421
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/78 (25%), Positives = 36/78 (46%)
Frame = +3
Query: 405 LLPLGRKKGAKLTEAEEAIINKKRSQKTGEEVPEQAAPVQGRGWSGGAIPHWTAVSMCGE 584
LL G +KGA+ EAE + ++ +++ E E + + GA +
Sbjct: 75 LLASGEEKGARAEEAEALVAGRRATEEEVAEASEGKVVEEVKEARAGAGAMNMTKHLWSG 134
Query: 585 SARSVRSRRMVTFLERVK 638
+ ++ SR +V LER+K
Sbjct: 135 AVAAMVSRTVVAPLERLK 152
>03_01_0438 +
3399203-3399297,3399389-3399480,3399638-3399750,
3400345-3400610,3400793-3400864,3401023-3401098,
3401241-3401339,3401432-3401586,3401679-3401783,
3401880-3401966,3402459-3402543,3402626-3402734,
3403468-3403544,3403635-3403715,3404137-3404328,
3404415-3404528,3404650-3404742,3404864-3404990,
3405075-3405151,3405455-3405502,3405588-3405657,
3405737-3405810,3405895-3406005,3406222-3406300,
3406936-3408320
Length = 1293
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 450 EEAIINKKRSQKTGEEVPEQAAPVQGRGWSGG 545
+EAII K+S+K + VP + + W GG
Sbjct: 648 KEAIIKFKKSRKHDQNVPFSVVVISDKDWLGG 679
>02_04_0064 -
19375497-19375580,19375659-19375733,19376359-19376514,
19377016-19377093,19377328-19377428,19377570-19377717,
19378172-19378316,19378803-19378906,19380257-19380385,
19380526-19380636,19380734-19380863,19381915-19382034,
19382360-19382481,19382965-19383048,19383241-19383357,
19383442-19383522,19384138-19384197,19384398-19384440,
19384528-19384626,19385353-19385564,19385964-19386091,
19386246-19386396
Length = 825
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 148 WQPGDLTHTSSSYEWAHVCRP*PSSYANDHD 56
W+ GD+ HT ++ W+ C +YA HD
Sbjct: 570 WKMGDIVHTLTNRRWSEKC----VTYAESHD 596
>11_06_0133 + 20443871-20445122,20445642-20446625,20446776-20447155
Length = 871
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -2
Query: 535 HPLPWTGAACSGTSSPVF*LRFLFMMASSASVSLAPF 425
H WTG CSG P + L M +SS S ++PF
Sbjct: 61 HYCDWTGVVCSGRRQPER-VVALLMNSSSLSGRISPF 96
>06_01_0913 - 7042230-7043332,7043420-7043621
Length = 434
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 233 PVSRRRARYLVLPPRDLTKWMRWGPSLVLAAGRPNSY 123
P +R+ R+ P +T + W P L +AAGRP ++
Sbjct: 180 PGTRKFWRW-AFPTHGVTVSVYWAPFLAMAAGRPENF 215
>05_07_0165 + 28107093-28108457
Length = 454
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 556 CGIAPPDHPLPWTGAACS 503
C +PPD+ LPW AA S
Sbjct: 248 CTYSPPDYGLPWADAAVS 265
>03_02_0922 -
12417328-12417816,12417929-12418399,12418568-12418663,
12418746-12418927,12419027-12419486
Length = 565
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Frame = +3
Query: 417 GRKKGAKLTEAEEAIINKKRSQKTGEEVPEQAAPVQGRGWSGGAIPH-----WTAVSMC 578
G G K AE + R +K E V+GR W A+P W+A S C
Sbjct: 61 GDHPGPKPRPAERGLFVLDRGEKVVESEGGHVRVVRGRPWPPAAVPDPWQRGWSAASGC 119
>09_04_0391 + 17248698-17248790,17248913-17249851,17249942-17250223
Length = 437
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 563 GC*HVWRVGPVSAVAPNGYIFGKGKELE 646
G HVW P +VAP GY+ G+ +L+
Sbjct: 59 GVTHVWLPPPSHSVAPQGYMPGRLYDLD 86
>09_04_0390 + 17241546-17241638,17241715-17242653,17242753-17243037
Length = 438
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 563 GC*HVWRVGPVSAVAPNGYIFGKGKELE 646
G HVW P +VAP GY+ G+ +L+
Sbjct: 59 GVTHVWLPPPSHSVAPQGYMPGRLYDLD 86
>08_02_0987 + 23334208-23334297,23334422-23335360,23335449-23335730
Length = 436
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 563 GC*HVWRVGPVSAVAPNGYIFGKGKELE 646
G HVW P +VAP GY+ G+ +L+
Sbjct: 58 GVTHVWLPPPSHSVAPQGYMPGRLYDLD 85
>02_05_0753 +
31510269-31510473,31510989-31511035,31511123-31511177,
31511282-31511354,31511441-31511528,31511658-31511740,
31511841-31511970,31512183-31512261,31512409-31512473,
31512581-31512682
Length = 308
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +1
Query: 382 GSGMKATTCCHSEGRKVPSSLRLRKPS*TKNAVKRLAKKYLSRQRLSKVEGGLE 543
GS + + EGR SLR+ +P+ K AV K ++ R K GG E
Sbjct: 18 GSDRRRSALYGGEGRARIGSLRVAEPAVAKAAVWARGSKPVAPLRAKKSSGGHE 71
>01_01_0660 +
5029070-5029177,5029303-5029398,5029494-5029556,
5029836-5029913,5030446-5030614,5030797-5031180,
5031959-5032042,5032143-5032288,5032810-5033070,
5033147-5033328,5033421-5033586,5033650-5033703,
5034702-5034965,5035088-5035303,5035388-5035540,
5035630-5035827
Length = 873
Score = 27.5 bits (58), Expect = 9.8
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Frame = -1
Query: 581 ATHANSRPVWNCSSRPPSTLDRRCLLRYFFASLLTAFFV------YDGFLSLSELGTFLP 420
A + +R + +C S +L R C +F++++ +F+ Y F +LS L
Sbjct: 459 ADNLQARRLQHCLSS--ESLRRWCTYEWFYSAVDYPWFMDNEFVNYLNFANLSHLSRLTR 516
Query: 419 SEWQQVVAFIPLPERCGIH 363
SEW + + + P R H
Sbjct: 517 SEWSTIRSSLGKPRRFSDH 535
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,797,069
Number of Sequences: 37544
Number of extensions: 483113
Number of successful extensions: 1437
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1434
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -