Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_E15
(650 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 173 3e-43
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 173 3e-43
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 173 3e-43
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 173 3e-43
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 98 2e-20
BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal pr... 63 1e-09
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 173 bits (422), Expect = 3e-43
Identities = 95/190 (50%), Positives = 118/190 (62%), Gaps = 1/190 (0%)
Frame = +1
Query: 46 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 225
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 226 DTGNFAWGSECSTRXDSYY*WLFINAF*Q*IGAYQXXPW*RMLLSWWMPHLSG-SGMKAT 402
D GNF+WGSEC TR ++ NA + + ++L P+ A
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVY-NASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYAL 119
Query: 403 TCCHSEGRKVPSSLRLRKPS*TKNAVKRLAKKYLSRQRLSKVEGGLEEQFHTGRLLACVA 582
+G K+ + K K++ KKY R++ +K+ LEEQF G+LLAC+A
Sbjct: 120 PLGRKKGAKLTPE---EEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIA 176
Query: 583 SRPGQCGRAE 612
SRPGQCGRA+
Sbjct: 177 SRPGQCGRAD 186
Score = 90.2 bits (214), Expect = 5e-18
Identities = 41/65 (63%), Positives = 50/65 (76%)
Frame = +3
Query: 315 NWCVPXXXLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTGE 494
N V LVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +
Sbjct: 88 NELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQK 147
Query: 495 EVPEQ 509
+ E+
Sbjct: 148 KYDER 152
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 173 bits (422), Expect = 3e-43
Identities = 95/190 (50%), Positives = 118/190 (62%), Gaps = 1/190 (0%)
Frame = +1
Query: 46 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 225
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 226 DTGNFAWGSECSTRXDSYY*WLFINAF*Q*IGAYQXXPW*RMLLSWWMPHLSG-SGMKAT 402
D GNF+WGSEC TR ++ NA + + ++L P+ A
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVY-NASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYAL 119
Query: 403 TCCHSEGRKVPSSLRLRKPS*TKNAVKRLAKKYLSRQRLSKVEGGLEEQFHTGRLLACVA 582
+G K+ + K K++ KKY R++ +K+ LEEQF G+LLAC+A
Sbjct: 120 PLGRKKGAKLTPE---EEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIA 176
Query: 583 SRPGQCGRAE 612
SRPGQCGRA+
Sbjct: 177 SRPGQCGRAD 186
Score = 90.2 bits (214), Expect = 5e-18
Identities = 41/65 (63%), Positives = 50/65 (76%)
Frame = +3
Query: 315 NWCVPXXXLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTGE 494
N V LVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +
Sbjct: 88 NELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQK 147
Query: 495 EVPEQ 509
+ E+
Sbjct: 148 KYDER 152
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 173 bits (422), Expect = 3e-43
Identities = 95/190 (50%), Positives = 118/190 (62%), Gaps = 1/190 (0%)
Frame = +1
Query: 46 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 225
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 226 DTGNFAWGSECSTRXDSYY*WLFINAF*Q*IGAYQXXPW*RMLLSWWMPHLSG-SGMKAT 402
D GNF+WGSEC TR ++ NA + + ++L P+ A
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVY-NASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYAL 119
Query: 403 TCCHSEGRKVPSSLRLRKPS*TKNAVKRLAKKYLSRQRLSKVEGGLEEQFHTGRLLACVA 582
+G K+ + K K++ KKY R++ +K+ LEEQF G+LLAC+A
Sbjct: 120 PLGRKKGAKLTPE---EEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIA 176
Query: 583 SRPGQCGRAE 612
SRPGQCGRA+
Sbjct: 177 SRPGQCGRAD 186
Score = 90.2 bits (214), Expect = 5e-18
Identities = 41/65 (63%), Positives = 50/65 (76%)
Frame = +3
Query: 315 NWCVPXXXLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTGE 494
N V LVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +
Sbjct: 88 NELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQK 147
Query: 495 EVPEQ 509
+ E+
Sbjct: 148 KYDER 152
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 173 bits (422), Expect = 3e-43
Identities = 95/190 (50%), Positives = 118/190 (62%), Gaps = 1/190 (0%)
Frame = +1
Query: 46 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 225
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 226 DTGNFAWGSECSTRXDSYY*WLFINAF*Q*IGAYQXXPW*RMLLSWWMPHLSG-SGMKAT 402
D GNF+WGSEC TR ++ NA + + ++L P+ A
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVY-NASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYAL 119
Query: 403 TCCHSEGRKVPSSLRLRKPS*TKNAVKRLAKKYLSRQRLSKVEGGLEEQFHTGRLLACVA 582
+G K+ + K K++ KKY R++ +K+ LEEQF G+LLAC+A
Sbjct: 120 PLGRKKGAKLTPE---EEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIA 176
Query: 583 SRPGQCGRAE 612
SRPGQCGRA+
Sbjct: 177 SRPGQCGRAD 186
Score = 90.2 bits (214), Expect = 5e-18
Identities = 41/65 (63%), Positives = 50/65 (76%)
Frame = +3
Query: 315 NWCVPXXXLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTGE 494
N V LVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +
Sbjct: 88 NELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQK 147
Query: 495 EVPEQ 509
+ E+
Sbjct: 148 KYDER 152
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 98.3 bits (234), Expect = 2e-20
Identities = 43/54 (79%), Positives = 47/54 (87%)
Frame = +1
Query: 46 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTK 207
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGG T+
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGCTR 54
Score = 90.2 bits (214), Expect = 5e-18
Identities = 41/65 (63%), Positives = 50/65 (76%)
Frame = +3
Query: 315 NWCVPXXXLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTGE 494
N V LVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +
Sbjct: 68 NELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQK 127
Query: 495 EVPEQ 509
+ E+
Sbjct: 128 KYDER 132
Score = 62.9 bits (146), Expect = 1e-09
Identities = 27/48 (56%), Positives = 36/48 (75%)
Frame = +1
Query: 469 KNAVKRLAKKYLSRQRLSKVEGGLEEQFHTGRLLACVASRPGQCGRAE 612
K K++ KKY R++ +K+ LEEQF G+LLAC+ASRPGQCGRA+
Sbjct: 119 KKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRAD 166
>BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal
protein S8 protein.
Length = 80
Score = 62.9 bits (146), Expect = 1e-09
Identities = 27/48 (56%), Positives = 36/48 (75%)
Frame = +1
Query: 469 KNAVKRLAKKYLSRQRLSKVEGGLEEQFHTGRLLACVASRPGQCGRAE 612
K K++ KKY R++ +K+ LEEQF G+LLAC+ASRPGQCGRA+
Sbjct: 11 KKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRAD 58
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,181,246
Number of Sequences: 237096
Number of extensions: 2629013
Number of successful extensions: 5783
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5783
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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