Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_E15
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...   153   1e-39
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   0.48 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   5.9  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   5.9  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   7.8  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            21   7.8  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score =  153 bits (372), Expect = 1e-39
 Identities = 67/74 (90%), Positives = 71/74 (95%)
 Frame = +1

Query: 46  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 225
           MGISRDHWHKRRATGGKR PIRKKRK+ELGRPAANTKLGPQRIH VR+RGGN KYRALRL
Sbjct: 1   MGISRDHWHKRRATGGKRKPIRKKRKFELGRPAANTKLGPQRIHTVRTRGGNKKYRALRL 60

Query: 226 DTGNFAWGSECSTR 267
           DTGNF+WGSEC+TR
Sbjct: 61  DTGNFSWGSECTTR 74



 Score = 94.7 bits (225), Expect = 7e-22
 Identities = 42/57 (73%), Positives = 48/57 (84%)
 Frame = +3

Query: 315 NWCVPXXXLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQK 485
           N  V    LVKNAIV +DATPFRQWYE HY+LPLGRK+GAKLTEAEE ++NKKRS+K
Sbjct: 88  NELVRTKTLVKNAIVTIDATPFRQWYEGHYVLPLGRKRGAKLTEAEEEVLNKKRSKK 144



 Score = 66.1 bits (154), Expect = 3e-13
 Identities = 29/48 (60%), Positives = 36/48 (75%)
 Frame = +1

Query: 469 KNAVKRLAKKYLSRQRLSKVEGGLEEQFHTGRLLACVASRPGQCGRAE 612
           K   K+   KY +RQR +KVE  LEEQF TGR+LAC++SRPGQCGR +
Sbjct: 139 KKRSKKAEAKYKARQRFAKVEPALEEQFATGRVLACISSRPGQCGRED 186



 Score = 25.4 bits (53), Expect = 0.48
 Identities = 14/20 (70%), Positives = 15/20 (75%)
 Frame = +2

Query: 272 TRIIDGCLLMPSNNELVRTK 331
           TRIID  +   SNNELVRTK
Sbjct: 76  TRIID-VVYNASNNELVRTK 94


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 577 HMLTAVQCGIAPPDHPLPWTGAACSGTS 494
           H    V   + PP+ P+P   +AC G++
Sbjct: 169 HQFQTVVASMDPPEPPVPTVTSACVGSA 196


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 292 TTINNTSLCGLNIQIPMRSFQYQD 221
           ++I     CGL  + PM SFQ  D
Sbjct: 647 SSIETNYECGLRFEDPMISFQPGD 670


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -1

Query: 374 CGIHHDNSILYQGXXWYA 321
           CG+H D  I  Q   W A
Sbjct: 546 CGLHRDTYIHAQQIAWMA 563


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = -1

Query: 131 NSYFLFLRMGARLPPVALLLCQ*SRLIPILAGSEKKKKKT 12
           +SY +F  MG+   P+ ++L    R+  ++A   +  + T
Sbjct: 196 SSYVIFSAMGSFFLPMLVMLYVYGRISCVIASRHRNLEAT 235


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -2

Query: 610 RRDRTDRADSPHMLTAVQCGIAPPDH 533
           +R + +   +  M+ A+ C I P DH
Sbjct: 9   KRRKKNLNQNQMMIWALDCSIKPKDH 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,472
Number of Sequences: 438
Number of extensions: 4382
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)