Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_E14
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|c...    30   0.24 
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    26   2.9  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    26   3.9  
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual        25   6.8  
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.8  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    25   9.0  

>SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +3

Query: 243 FVNTKYANVSDDFPDIEFHFISGSTNSDGGEQIRKAHGLMETFY 374
           +V+  Y  V+  + D  +++ISG +N D GE  +K + + +  Y
Sbjct: 243 YVSGPYRRVAFTYQDENYYYISGRSNKDIGELSKKMYLMYKQAY 286


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 454 KPLLLGRSNIGITLQTSILLIGLKTAS*KVSIKP-CALRIC 335
           KP++LG  + G+ ++    +  LK     V+++P C  R+C
Sbjct: 61  KPMILGHESAGVVVEVGKGVSSLKPGD-PVAVEPGCVCRLC 100


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 135 RAEFGTRRLHTVSTLMEY 188
           R E  +R LHT +TLM+Y
Sbjct: 440 RKELSSRALHTTATLMKY 457


>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 423 PMLLRPRSKGFIQLRSANPYDYP 491
           P+LL+P   G +Q+R  NP  YP
Sbjct: 270 PILLKPIEDGPLQVRIWNPKLYP 292


>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -2

Query: 246 QKLNPQRRPL*SRALHQEQRIPSTY*PYEGASCRIRH--EGST 124
           Q  N Q +PL +  + Q++ + +T  PYE     ++H  +G+T
Sbjct: 178 QNTNEQIQPLSNFDISQQEYLNNTRIPYENEDLHLQHITQGTT 220


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -1

Query: 328 PSEFVEP--DIK*NSISGKSSDTFAYFVFTKAKPSTPPIIVKGPSP 197
           P  + EP  D   ++I    +D+ +   F     STPP +V  P+P
Sbjct: 123 PPNYPEPKNDSVSSNIDEFPNDSISSASFLSVPQSTPPYLVSQPTP 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,045,485
Number of Sequences: 5004
Number of extensions: 42020
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)