Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_E14
         (520 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455...    30   1.3  
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99...    29   1.7  
03_02_0573 - 9571040-9571234,9571352-9571444,9571735-9571818,957...    28   3.9  
01_06_1821 + 40126389-40126508,40126589-40126646,40126782-401268...    28   5.2  
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233...    27   9.0  
01_01_0558 + 4098383-4098510,4100462-4100572,4100765-4100853,410...    27   9.0  

>04_04_0862 +
           28843654-28844386,28844486-28844895,28844995-28845560,
           28845737-28845803
          Length = 591

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 417 VIPMLLRPRSKGFIQLRSANPYDYPYIYANY 509
           ++  +L P S G ++LR+ NP D P +  NY
Sbjct: 418 ILEKILGPLSTGHLELRNRNPDDNPSVTFNY 448


>03_01_0127 +
           988066-988171,988259-988881,988986-989396,989463-990037,
           990137-990194
          Length = 590

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 417 VIPMLLRPRSKGFIQLRSANPYDYPYIYANYLTD 518
           ++  +L P S G + LRSA+P   P +  NY  D
Sbjct: 417 ILEKILGPMSTGHVALRSADPDANPAVTFNYFRD 450


>03_02_0573 -
           9571040-9571234,9571352-9571444,9571735-9571818,
           9572401-9572480,9572609-9572759,9573067-9573579
          Length = 371

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -2

Query: 384 RPHHKRFPLNRVLYESVLRHLNLLSQI*NEILYQGNHLIH 265
           RPHH R PL R L   +LR   LL  +   +L     LI+
Sbjct: 15  RPHHHRLPLPRSLASYLLREHRLLFVLLGFLLASSCFLIY 54


>01_06_1821 +
           40126389-40126508,40126589-40126646,40126782-40126837,
           40127076-40127176,40127336-40127405,40127501-40127570,
           40127970-40128026,40128110-40128177,40128258-40128338,
           40128474-40128551,40128644-40128799,40128874-40128933,
           40129253-40129317,40130002-40130059
          Length = 365

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -1

Query: 286 SGKSSDTFAYFVFTKAKPSTPPIIVKGPSPRTAYSI-NVLTV 164
           S  S+D F +F       S PP++     P  AYS  NVL V
Sbjct: 104 SQSSNDVFRWFCVEAGSSSNPPVLFIHGFPSQAYSYRNVLPV 145


>02_05_0304 +
           27721413-27721479,27721561-27722208,27722399-27723371,
           27724196-27724237,27724379-27724466,27724911-27725016,
           27726499-27726614
          Length = 679

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 417 VIPMLLRPRSKGFIQLRSANPYDYPYIYANYLT 515
           ++  +L P+S G + LR+ +P D P +  NY +
Sbjct: 410 ILEKVLGPQSTGRLALRNLDPDDNPTVSFNYFS 442


>01_01_0558 + 4098383-4098510,4100462-4100572,4100765-4100853,
            4100974-4101107,4101337-4101435,4102619-4102994,
            4103883-4104337,4104419-4107409
          Length = 1460

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -2

Query: 153  SCRIRHEGSTLVNFTTNLRYYLIDASTMLVIEYVDIYFQVNKVQKKKKTSC 1
            SC+   +  T VN   ++R+ L+DAS+ L+  Y  I + + K+   ++  C
Sbjct: 851  SCKNLVKLPTGVNNLISIRHLLVDASSKLLAGYAGISY-IGKLTSLQELDC 900


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,546,244
Number of Sequences: 37544
Number of extensions: 255127
Number of successful extensions: 489
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)