Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_E14
         (520 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    28   0.050
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   1.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   1.1  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   1.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   4.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   5.7  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 28.3 bits (60), Expect = 0.050
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 432 LRPRSKGFIQLRSANPYDYPYIYANYL 512
           ++P SKG I L S +P D P I++N L
Sbjct: 454 VQPTSKGRITLNSKDPLDPPVIWSNDL 480


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +1

Query: 304 YLAQQIQMAENRFVK 348
           Y+A++IQM +NRF K
Sbjct: 306 YMAKRIQMRKNRFQK 320


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +1

Query: 304 YLAQQIQMAENRFVK 348
           Y+A++IQM +NRF K
Sbjct: 306 YMAKRIQMRKNRFQK 320


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +1

Query: 304 YLAQQIQMAENRFVK 348
           Y+A++IQM +NRF K
Sbjct: 245 YMAKRIQMRKNRFQK 259


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 13/54 (24%), Positives = 23/54 (42%)
 Frame = +3

Query: 294 FHFISGSTNSDGGEQIRKAHGLMETFYDAVFRPINNMDVWSVIPMLLRPRSKGF 455
           F ++    N D    + K    +   YD   RPI++  + + + M L P+   F
Sbjct: 29  FSYLLNCKNYDHPTTLLKLKRYLFCEYDPNVRPISSHQIANNVTMQLLPKLMEF 82


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 513 SNNLHRYMDSHTG 475
           S  LHR+M  HTG
Sbjct: 160 SGKLHRHMRIHTG 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,638
Number of Sequences: 438
Number of extensions: 2756
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)