Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_E13
         (480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    30   0.21 
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    25   5.9  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   7.8  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   7.8  

>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 29.9 bits (64), Expect = 0.21
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 246 IQRIFFLSIMFLV*YNYFYFIILNINWNFQW-FIF 145
           I R+ F S++F++  + FYF+  ++    QW F+F
Sbjct: 409 ILRVLFFSLLFIIGIHIFYFLFFHVATIQQWPFLF 443


>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -3

Query: 109 LNIRTCRNFFR--RVVNFIILILYYSVIL 29
           L+ RT RN  +  +VVNF ILI  ++V L
Sbjct: 67  LSARTFRNLTKCAKVVNFCILISLFNVFL 95


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 251 IKIMFLYQDK*-TTYNKKMICLWIERDINEMIVNKKYKLSTQD 376
           IKI  L  D+  T  N  M C  I+ D+  +IVN++ K +T +
Sbjct: 784 IKIWVLTGDRQETAINIGMSCKLIDEDMGLVIVNEETKEATAE 826


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 124 ENNV*LNIRTCRNFFRRVVNFIIL 53
           + N+ +N+RT R+FFR  +  I+L
Sbjct: 308 KENLAVNVRTARDFFREDICGILL 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,767,865
Number of Sequences: 5004
Number of extensions: 33017
Number of successful extensions: 49
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)