Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_E13
         (480 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical ...    28   3.1  
Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical pr...    27   7.0  

>AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical
           protein W04C9.6 protein.
          Length = 659

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -1

Query: 480 TIFIRPYRLNGQLKLNNFVD*HNCYKFSQIIIIFLSCVLNLY 355
           TIFI P+ +N  +  + F D  NC+     +++F++ +  L+
Sbjct: 401 TIFIEPFFVNMIVTDDTFTDWRNCFLAHAGLLLFVNTIFCLF 442


>Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical
           protein R10E8.6 protein.
          Length = 1696

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/52 (28%), Positives = 32/52 (61%), Gaps = 8/52 (15%)
 Frame = +2

Query: 251 IKIMFLYQDK*TTYNKKMI-------CLWIERDINEMIVNKKY-KLSTQDRN 382
           ++IMF Y  + T+Y K ++       CL +E D++++++++ Y  +S +D N
Sbjct: 725 VRIMFSYSSELTSYRKNIVYKNHREGCL-LEFDVHKIVIDEDYVTVSCEDLN 775


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,480,857
Number of Sequences: 27780
Number of extensions: 176454
Number of successful extensions: 318
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)