Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_E11
(582 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,627... 31 0.89
05_03_0365 + 13053769-13054461 30 1.5
04_04_1273 - 32307273-32307569,32307659-32307791,32307874-323081... 29 3.6
01_05_0386 - 21683909-21685334,21685513-21685541 29 3.6
01_03_0103 - 12567986-12568141,12568307-12568442,12568751-125688... 29 3.6
05_06_0081 + 25423847-25424302 28 4.7
04_04_0315 - 24331996-24332853 28 6.2
02_05_1303 + 35572403-35572624,35572744-35572860,35572987-355731... 28 6.2
02_02_0526 + 11185825-11186832,11187795-11187869 27 8.2
>09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,
6272359-6272511,6273381-6273586,6274280-6274733,
6276573-6276610,6276923-6277046,6277184-6277246,
6277350-6277412,6277526-6278152,6278267-6278294,
6278373-6278413,6278689-6278851,6278987-6279039,
6279217-6279262,6279373-6279444,6279578-6279741,
6279968-6280099,6280249-6280565,6280721-6280892,
6281009-6281107,6281275-6281349,6281446-6281504,
6281647-6281836,6281982-6282020
Length = 1255
Score = 30.7 bits (66), Expect = 0.89
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +1
Query: 364 RRRKSQQMREKPDVTAAAAAGDMYKESDRSSNISDLKLQLPQSDGSYDLEYTGSDRSDAK 543
R+R Q + PDV + K + S + + Q D +Y + +G + S+A
Sbjct: 931 RKRAFQDLTNSPDVVCLGSNTCSNKTKNMSIKSEHIYNKSNQFDSNYKVFGSGFNNSEAS 990
Query: 544 MTGG-LPLTGP 573
+GG LP GP
Sbjct: 991 SSGGRLPPHGP 1001
>05_03_0365 + 13053769-13054461
Length = 230
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 385 MREKPDVTAAAAAGDMYKESDRSSNISDLKLQLPQSDGSYD 507
+ E+PD AAAA+G+ +E D + + + L SDG D
Sbjct: 183 IEEEPDQDAAAASGEEEEEDDMGFFMVGITIALEFSDGEED 223
>04_04_1273 -
32307273-32307569,32307659-32307791,32307874-32308105,
32308220-32308436,32308594-32308718,32309416-32310757
Length = 781
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 406 TAAAAAGDMYKESDRSSNISDLKLQLPQSDGSYDLEYTGSDRSDAKMTG 552
T+AAAA + + D+ N++D + + GSY L + +S + G
Sbjct: 24 TSAAAAAGVADKLDKGQNLTDGQTLVSSGGGSYTLGFFSPGKSTKRYLG 72
>01_05_0386 - 21683909-21685334,21685513-21685541
Length = 484
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +1
Query: 355 CHRRRRKSQQMREKPDVTAAAAAGDMYKESDRSSNISDLKLQLPQSDGSYDLEYTGS 525
C R++R+ + R+ + TAAAAA DM + + ++ L +DG + ++ S
Sbjct: 236 CGRKQRRPGRKRKAAEPTAAAAAADMSSQDNPLCSL--LASNTAGADGGIQIAFSTS 290
>01_03_0103 -
12567986-12568141,12568307-12568442,12568751-12568824,
12568932-12569175,12569480-12569766,12570618-12571103,
12571348-12571459,12571540-12571745,12573071-12573276,
12573831-12574162,12574284-12574825,12574967-12576308,
12576386-12576457,12578438-12578505,12579011-12580174
Length = 1808
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -2
Query: 557 RPPVIFASDLSDPVYSKS*LPSLCGNCNFKSLMFELLSLSLYMSPAAAAAVTSGFS 390
+P IF SD P S S + + NC F L+L + ++ A+ SGF+
Sbjct: 611 KPSAIFMSDSLWPYLSISDICPVKQNCGFAESKRPALTLCCFEEDCSSRAIYSGFN 666
>05_06_0081 + 25423847-25424302
Length = 151
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 453 APVALLVHVSGGGGGRNVR 397
A V +L H SGGGGGR R
Sbjct: 13 AAVVVLSHASGGGGGRGPR 31
>04_04_0315 - 24331996-24332853
Length = 285
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 432 VQGERQELEHKRFEVTVTAKRRKL*LGVHGIG*IRR 539
VQGERQ H E++ +A L L H +G +RR
Sbjct: 62 VQGERQSPRHGSMELSASALGFGLCLDPHPVGGLRR 97
>02_05_1303 +
35572403-35572624,35572744-35572860,35572987-35573112,
35573217-35573279,35573837-35573944,35574587-35574664,
35574772-35574864,35575206-35575292,35575429-35575530,
35575617-35575736,35575839-35575901,35575974-35576119,
35576203-35576296,35576399-35576457,35576568-35576607,
35576694-35576785,35576877-35576946,35578172-35578333,
35578477-35578703,35578863-35579070,35579173-35579258,
35579450-35579541,35579674-35579870
Length = 883
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 361 RRRRKSQQMREKPDVTAAAAAGDMYKESDRSSNISDLKLQL 483
RRRRK ++ + + A AAGD + D + D+K Q+
Sbjct: 35 RRRRKQKKNKAASNAADADAAGDAGADDDAAEEKPDVKPQV 75
>02_02_0526 + 11185825-11186832,11187795-11187869
Length = 360
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +1
Query: 367 RRKSQQMREKPDVTAAAAAGDMYKESDR 450
RR+ +++R+ P++ +AA A D + E D+
Sbjct: 59 RRRRRRVRQPPEIVSAAPAVDCWHEPDQ 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.130 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,693,445
Number of Sequences: 37544
Number of extensions: 301909
Number of successful extensions: 853
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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