Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_E10
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   226   2e-60
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   226   2e-60
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   3.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.0  
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    26   5.3  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   7.0  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    25   7.0  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    25   9.3  
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    25   9.3  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  226 bits (553), Expect = 2e-60
 Identities = 103/206 (50%), Positives = 139/206 (67%)
 Frame = +1

Query: 13  GRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKV 192
           GRMFAPTK WR+WH                          ARGH +E+IPE+PLVV D V
Sbjct: 99  GRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAV 158

Query: 193 QEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLT 372
           Q   KTK+AV  L+ IKA+ DV+KV  S++LRAGKGK+RNRR VQR+GPL+++N+D G+ 
Sbjct: 159 QSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTGIV 218

Query: 373 RAFRNIPGIEMXXXXXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSKEKKNFN 552
           +AFRNIPG+E+           APGGHLGRF+IWTKSAF  LD +FGS    ++ KKN+ 
Sbjct: 219 KAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYF 278

Query: 553 LPQPKMANTDLSRLLKSEEIRKVLRA 630
           LP+  ++N D++RL+ S+EI+ +++A
Sbjct: 279 LPENIISNADVTRLINSDEIQSIVKA 304


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  226 bits (553), Expect = 2e-60
 Identities = 103/206 (50%), Positives = 139/206 (67%)
 Frame = +1

Query: 13  GRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKV 192
           GRMFAPTK WR+WH                          ARGH +E+IPE+PLVV D V
Sbjct: 99  GRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAV 158

Query: 193 QEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLT 372
           Q   KTK+AV  L+ IKA+ DV+KV  S++LRAGKGK+RNRR VQR+GPL+++N+D G+ 
Sbjct: 159 QSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDAGIV 218

Query: 373 RAFRNIPGIEMXXXXXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSKEKKNFN 552
           +AFRNIPG+E+           APGGHLGRF+IWTKSAF  LD +FGS    ++ KKN+ 
Sbjct: 219 KAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYF 278

Query: 553 LPQPKMANTDLSRLLKSEEIRKVLRA 630
           LP+  ++N D++RL+ S+EI+ +++A
Sbjct: 279 LPENIISNADVTRLINSDEIQSIVKA 304


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 540 EELQPAPAEDGQHRPQPSAEVRRDPQGPARAQQ 638
           EE+Q    ED  H    + E+ R  + P RAQQ
Sbjct: 358 EEVQQTVQEDLPHPTAETVEIARFAEQPVRAQQ 390


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 520 KTPSKEKKNFNLPQPKMANTDLSRLLKSEEIRKVLRAPN 636
           KTPS EK+    P P + N D   L  +E    V + P+
Sbjct: 586 KTPSPEKQKVLSPPPIITNFDKETLASNEAHEAVPQKPS 624


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -2

Query: 468 DEPAEMAAGCQLQEVQLVHVEHLDARDVAECTSQTLVLIIDDKGSFA 328
           +E A +AA     EVQ+VH E    R  A    ++ VL  ++K + A
Sbjct: 513 NEGALIAARSNSNEVQMVHFEQAIERVTAGLEKKSRVLSPEEKNTVA 559


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +1

Query: 499  DPLFGSWKTPSKEKKNFNLPQPKMANTDLSRL----LKSEEIRKVLRAPN 636
            +PLF + KT S ++    L +PK  N  L RL    + SEEI   L  PN
Sbjct: 971  EPLFVTVKTASTDESRSVLIKPKADNVILFRLKRFIMSSEEIN--LDIPN 1018


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 526 PSKEKKNFNLPQPKMANTDLSRLLKSEEI 612
           PS+ K   ++P PKM +TD    L SE +
Sbjct: 251 PSQPKNAVSVPIPKMDSTDSKGELPSESL 279


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -2

Query: 153 LNNMPSSLNEGRY-PGRCHGGGHGSTSLP*VHATVPA 46
           L N+P +L   RY     HG  HGS S P     VP+
Sbjct: 47  LYNLPRTLLNSRYYSNHSHGLVHGSKSPPSSQFLVPS 83


>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 478 KSAFDRLDPLFGSWKTPSKEKKNFNLPQPKMANTDLSRLLKSEEIRKVLRAPN 636
           K  F++L  +F   K+ S EKK FN  Q +  N+    L+ +   +   + PN
Sbjct: 108 KVEFEKLGLVFKDAKS-SSEKKQFNNSQSQSNNSQELSLMNNAYNKSSAQQPN 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,220,211
Number of Sequences: 5004
Number of extensions: 39312
Number of successful extensions: 134
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)