Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_E10
(643 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 217 8e-57
07_01_0578 + 4295386-4296489,4297394-4297507 215 3e-56
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 31 0.78
11_04_0025 + 12382485-12382823,12382835-12382894,12382960-123830... 30 1.4
06_03_0865 - 25516072-25517007 29 4.1
12_01_0861 + 8153108-8153266,8154633-8155136 28 5.5
03_04_0023 + 16537257-16537272,16537515-16537929,16538404-165384... 28 5.5
11_02_0065 - 7938007-7938393,7939292-7939435,7940597-7940665,794... 28 7.2
09_02_0133 + 4707944-4708308,4708320-4708534,4708626-4708672,470... 28 7.2
11_01_0342 + 2548147-2548275,2548385-2548425,2548521-2548570,254... 27 9.6
07_01_0929 + 7818973-7820019,7820092-7820328,7820455-7820541,782... 27 9.6
05_01_0224 - 1662818-1663033,1663183-1663266,1663315-1663434,166... 27 9.6
04_01_0519 + 6831912-6831978,6832333-6832488,6832748-6833098,683... 27 9.6
03_02_0377 - 7898075-7898605,7900782-7901000,7901079-7901142,790... 27 9.6
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 217 bits (529), Expect = 8e-57
Identities = 100/211 (47%), Positives = 135/211 (63%), Gaps = 1/211 (0%)
Frame = +1
Query: 10 GGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDK 189
GGRMFAPTK WRRWH ARGH +E +PE PLVVSD
Sbjct: 101 GGRMFAPTKIWRRWHRRVNIRLRRIAVASALAATAVPSLVLARGHRIEGVPEFPLVVSDS 160
Query: 190 VQEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKG- 366
++ I KT Q++ L++I A++D K S +RAGKGKMRNRR + RKGPLI+Y +
Sbjct: 161 IESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGKGKMRNRRYINRKGPLIVYGTEGSK 220
Query: 367 LTRAFRNIPGIEMXXXXXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSKEKKN 546
+ +AFRN+PG+++ APGGHLGRF+IWT+ AF +LD ++G + TP+ +KK
Sbjct: 221 VVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKLDEVYGGFDTPALKKKG 280
Query: 547 FNLPQPKMANTDLSRLLKSEEIRKVLRAPNK 639
F LP+PKMAN DLSRL+ S+E++ V++ NK
Sbjct: 281 FVLPRPKMANADLSRLINSDEVQSVVKPINK 311
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 215 bits (524), Expect = 3e-56
Identities = 96/211 (45%), Positives = 135/211 (63%), Gaps = 1/211 (0%)
Frame = +1
Query: 10 GGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDK 189
GGRMFAPTK WR+WH ARGH +E +PELPLV+SD
Sbjct: 102 GGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIETVPELPLVISDS 161
Query: 190 VQEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKG- 366
+ I KT QA+ L+++ A++D K S +R GKGKMRNRR + RKGPLI+Y +
Sbjct: 162 AESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKGPLIVYGTEGSK 221
Query: 367 LTRAFRNIPGIEMXXXXXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSKEKKN 546
+ +AFRN+PG+++ APGGHLGRF+IWT+SAF +L+ ++G+++ PS +KK
Sbjct: 222 IVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKG 281
Query: 547 FNLPQPKMANTDLSRLLKSEEIRKVLRAPNK 639
F LP+PKMAN DL R++ S+E++ V++ NK
Sbjct: 282 FILPRPKMANADLGRIINSDEVQSVVKPLNK 312
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 31.1 bits (67), Expect = 0.78
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +1
Query: 439 APG--GHLGRFIIWTKSAFDRLDPLFGSWKTPSKEKKNFNLPQPKMANT 579
APG G GR+++ SA + LDP F SW S+E K F++ + A++
Sbjct: 670 APGVDGCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEEISHASS 717
>11_04_0025 +
12382485-12382823,12382835-12382894,12382960-12383073,
12383187-12383837
Length = 387
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 501 PAVRLVEDTIEGEEELQPAPAEDGQHRPQPSAEVRRDPQGPA 626
P++ D E EE++ A AE R PSA +R P P+
Sbjct: 45 PSIEQALDEEETEEDVDQAAAEASDTRKTPSASPKRTPPTPS 86
>06_03_0865 - 25516072-25517007
Length = 311
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -1
Query: 199 SPGPCPRPLTATRESSQQYAL*PEXXXXXXXXXXXXXRQHVSAVGSRDG 53
SP P P P A S+ QY PE +++++VG R G
Sbjct: 233 SPSPPPPPPPAAAASTTQYPFTPEFAAAMQEMIRAEVHKYMASVGVRAG 281
>12_01_0861 + 8153108-8153266,8154633-8155136
Length = 220
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +3
Query: 510 RLVEDTIEGEEELQP-APAEDGQHRPQPSAEVRRDPQ 617
RL + +G+EE++P + E G H P PS+++R P+
Sbjct: 60 RLGREREKGDEEMEPVSMTEKGAHHP-PSSQLRAAPR 95
>03_04_0023 +
16537257-16537272,16537515-16537929,16538404-16538466,
16538604-16538607
Length = 165
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Frame = -2
Query: 120 RYPGRCHGGG---HGSTSLP*VHATVPAPPRLGRRE 22
R+ HGG HG L HA P PP+ RR+
Sbjct: 47 RHEHPAHGGAQHAHGGEQLQLAHARTPTPPQQQRRQ 82
>11_02_0065 -
7938007-7938393,7939292-7939435,7940597-7940665,
7940762-7940809,7941488-7941584,7941688-7941767,
7941841-7941912,7942256-7942350,7943903-7943984,
7945176-7945209,7945255-7945262,7945657-7946058
Length = 505
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 531 EGEEELQPAPAEDGQHRPQPSAEVRRDPQGP 623
+ E++ Q P Q +PQP A + P GP
Sbjct: 444 KNEQQQQAQPQPQPQPQPQPPAGANKQPPGP 474
>09_02_0133 +
4707944-4708308,4708320-4708534,4708626-4708672,
4708997-4709393,4710042-4710608,4710708-4710838,
4711274-4711747
Length = 731
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = -3
Query: 635 LGARRTLRISSDFSRRLRSVLAIFGWGRLKFFFSFDGVFHEPNSGSSLSKADLVQMMNLP 456
+ R L +DF +L + + G+ K + SFD V +P + SL + + LP
Sbjct: 659 MSTRAILSTKNDFVDKLNTKMIDRFPGKEKIYLSFDSVDDDPQNSYSLDFLNTITPNGLP 718
>11_01_0342 +
2548147-2548275,2548385-2548425,2548521-2548570,
2548830-2548974,2549854-2549859,2550122-2550245,
2550422-2550877,2550960-2551013
Length = 334
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 65 TYGRDVL-PWPPPWQRPGYRPSFRLEGILLRR 157
TYG +L P+PPP P PS+ EG ++ R
Sbjct: 275 TYGTPLLQPFPPPTPPPSLTPSYN-EGPIISR 305
>07_01_0929 +
7818973-7820019,7820092-7820328,7820455-7820541,
7820785-7820919
Length = 501
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 552 PAPAEDGQHRPQPSAEVRRDPQGPARAQQ 638
PAP++DG P+PS D + P ++
Sbjct: 405 PAPSDDGSASPEPSEGESADEKNPEEEEE 433
>05_01_0224 -
1662818-1663033,1663183-1663266,1663315-1663434,
1664527-1664655,1664743-1664988
Length = 264
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 89 WPPPWQRPGYRPSFRLEGILLRR 157
WPPP P P L+GIL RR
Sbjct: 231 WPPPSFPPSSTPPSDLDGILSRR 253
>04_01_0519 +
6831912-6831978,6832333-6832488,6832748-6833098,
6833481-6833662,6833756-6834004,6834182-6834406,
6837492-6837791,6838642-6839215,6839959-6840059
Length = 734
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 148 VEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAWSDVL 261
V K+PE LV + K+Q + K R + A+S++L
Sbjct: 56 VTKVPETKLVANPKIQNVRDLKSLRRLSRSLLAFSNLL 93
>03_02_0377 -
7898075-7898605,7900782-7901000,7901079-7901142,
7901226-7901282,7901373-7901471,7901744-7901793,
7902378-7902422,7902967-7903062
Length = 386
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 504 AVRLVEDTIEGEEELQPAPAEDGQHRP 584
A+ +D +EG EE P P E + RP
Sbjct: 336 AIDEADDAVEGTEEGDPVPGETVEERP 362
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,772,816
Number of Sequences: 37544
Number of extensions: 345493
Number of successful extensions: 1439
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1424
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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