Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_E10
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   220   6e-58
U41528-3|AAK39170.2|  594|Caenorhabditis elegans Kinesin-like pr...    29   2.1  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin...    27   8.6  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  220 bits (538), Expect = 6e-58
 Identities = 101/211 (47%), Positives = 138/211 (65%), Gaps = 1/211 (0%)
 Frame = +1

Query: 10  GGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDK 189
           GG MFAP K +RRWH                         QARGH+++++ E+PLVVSDK
Sbjct: 97  GGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDK 156

Query: 190 VQEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGL 369
           V+   KTK+AV+FLRR   W+D+ KVY S+R RAGKGK+RNR+  Q+ GP++IY +D   
Sbjct: 157 VESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVIYGQDAEC 216

Query: 370 TRAFRNIPGIEMXXXXXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSKE-KKN 546
            RAFRNIPG+++           APGGHLGR IIWT+SAF +LD ++G+    S + KK 
Sbjct: 217 ARAFRNIPGVDVMNVERLNLLKLAPGGHLGRLIIWTESAFKKLDTIYGTTVANSSQLKKG 276

Query: 547 FNLPQPKMANTDLSRLLKSEEIRKVLRAPNK 639
           +++P P MAN+D SR+++SEE+ K +RAP K
Sbjct: 277 WSVPLPIMANSDFSRIIRSEEVVKAIRAPKK 307


>U41528-3|AAK39170.2|  594|Caenorhabditis elegans Kinesin-like
           protein protein 8 protein.
          Length = 594

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 22/66 (33%), Positives = 35/66 (53%)
 Frame = +1

Query: 136 RGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNR 315
           R  + EK+ +L   +S + +EIN  K+ V    RIK   D L++ KS+R    +  +R R
Sbjct: 353 RSDVEEKLDKLKDDISSREREINAQKEEV---NRIK---DSLRLEKSKRNELEEEVLRQR 406

Query: 316 RRVQRK 333
           R  Q +
Sbjct: 407 RCAQEE 412


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 390 PWHRDAQREQAEPPEAGTRRPSRQ 461
           PW+        EPP  G+RRPS+Q
Sbjct: 802 PWYSRDPIVNPEPPSVGSRRPSKQ 825


>AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin
            related protein 2 protein.
          Length = 1335

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/68 (26%), Positives = 31/68 (45%)
 Frame = -3

Query: 557  GRLKFFFSFDGVFHEPNSGSSLSKADLVQMMNLPRWPPGASFRRFSLFTLSISMPGMLRN 378
            G++ FF +         +   L+K+     +++P  P G SFR   ++  S S+  ML  
Sbjct: 1268 GKINFFQTSQSFLGMGQAQLKLTKSQPAPTVSVPTTPSGTSFRPRLVWINSKSLTLMLPE 1327

Query: 377  ARVRPLSL 354
             R +  SL
Sbjct: 1328 GREQRFSL 1335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,862,859
Number of Sequences: 27780
Number of extensions: 248385
Number of successful extensions: 1032
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)