Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_E09
(581 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 228 5e-61
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 131 8e-32
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 123 2e-29
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 118 6e-28
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 31 0.16
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.1
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 2.6
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 26 3.5
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 4.6
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 4.6
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom... 25 8.1
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 25 8.1
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 228 bits (557), Expect = 5e-61
Identities = 106/169 (62%), Positives = 127/169 (75%)
Frame = +3
Query: 75 LTFLRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVS 254
L +R+E+E+CD LQGFQ KIREEYPDR+M T+SV P+PK S
Sbjct: 117 LDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSS 176
Query: 255 DTVVEPYNATLSVHQLVENTDETYCIDNEALCDICFRTLKLSTPTYGDLNHLVSLTMSGV 434
DTVVEPYNATLS+HQLVEN+DET+CIDNEAL I TLK+ +P+Y DLNHLVS M+GV
Sbjct: 177 DTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGV 236
Query: 435 TTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFDPLTSRGSRQYRALT 581
TT RFPG+LN+DLRKLAVNMVPFPRLHFFM GF PL + GS ++A++
Sbjct: 237 TTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVS 285
Score = 35.5 bits (78), Expect = 0.006
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +1
Query: 7 AGAGNNWANGHYTEGAD 57
+GAGN WA GHYTEGA+
Sbjct: 95 SGAGNIWAKGHYTEGAE 111
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 131 bits (316), Expect = 8e-32
Identities = 59/156 (37%), Positives = 91/156 (58%)
Frame = +3
Query: 84 LRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTV 263
+R+ +++C LQGF ++ EY + +SV P+P+VS +V
Sbjct: 126 IRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSV 185
Query: 264 VEPYNATLSVHQLVENTDETYCIDNEALCDICFRTLKLSTPTYGDLNHLVSLTMSGVTTC 443
VEPYN+ L+ H ++N+D T+ +DNEA DIC R L + PTY +LN L++ +S +T
Sbjct: 186 VEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITAS 245
Query: 444 LRFPGQLNADLRKLAVNMVPFPRLHFFMPGFDPLTS 551
LRF G LN DL + N+VP+PR+HF + + P+ S
Sbjct: 246 LRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVS 281
Score = 25.4 bits (53), Expect = 6.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 13 AGNNWANGHYTEGAD 57
A NN+A GHYT G +
Sbjct: 103 ASNNYARGHYTVGKE 117
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 123 bits (296), Expect = 2e-29
Identities = 56/156 (35%), Positives = 89/156 (57%)
Frame = +3
Query: 84 LRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTV 263
+R+ +++C LQGF ++ EY + +SV P+P+VS +V
Sbjct: 122 IRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSV 181
Query: 264 VEPYNATLSVHQLVENTDETYCIDNEALCDICFRTLKLSTPTYGDLNHLVSLTMSGVTTC 443
VEPYN+ L+ H ++ D T+ +DNE+ DIC R L + P+Y +LN L++ +S +T
Sbjct: 182 VEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITAS 241
Query: 444 LRFPGQLNADLRKLAVNMVPFPRLHFFMPGFDPLTS 551
LRF G LN DL + N+VP+PR+HF + + P+ S
Sbjct: 242 LRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVS 277
Score = 25.4 bits (53), Expect = 6.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 13 AGNNWANGHYTEGAD 57
A NN+A GHYT G +
Sbjct: 99 ASNNYARGHYTVGKE 113
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 118 bits (284), Expect = 6e-28
Identities = 57/169 (33%), Positives = 88/169 (52%), Gaps = 1/169 (0%)
Frame = +3
Query: 75 LTFLRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVP-SPKV 251
+ + +E++ D L+GF ++ + YP +I+ TYSV P S V
Sbjct: 119 MDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSV 178
Query: 252 SDTVVEPYNATLSVHQLVENTDETYCIDNEALCDICFRTLKLSTPTYGDLNHLVSLTMSG 431
SD VV+PYN+ L++ +L N D +DN AL I L PT+ N LVS MS
Sbjct: 179 SDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSA 238
Query: 432 VTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFDPLTSRGSRQYRAL 578
TT LR+PG +N DL + +++P PR HF + + P T++ + +A+
Sbjct: 239 STTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAI 287
Score = 27.1 bits (57), Expect = 2.0
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 10 GAGNNWANGH 39
GAGNNWANG+
Sbjct: 99 GAGNNWANGY 108
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 30.7 bits (66), Expect = 0.16
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Frame = +1
Query: 136 TLSE-AVPAPVWAHYLSQRSVKSTPTES*THTQSSP----RPKYQTPSSNPTMRLSQCTN 300
T+S+ AVP+ +A+ +S RSV S T+S T++SP K S T+ S TN
Sbjct: 643 TVSDTAVPSMSFANNISSRSVISAATDSKPSTRTSPPFVNNTKPIVAKSPVTVTASSETN 702
Query: 301 --S*KTQTKHTVSITRHSAIFASARSN 375
S K K + ++ + +F RSN
Sbjct: 703 KKSQKINKKASPRVSLWTKLFGKFRSN 729
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 1.1
Identities = 31/133 (23%), Positives = 49/133 (36%), Gaps = 6/133 (4%)
Frame = +1
Query: 193 VKSTPTES*THTQSSPRPKYQTPSSNPTMRLSQCTNS*KTQTKHTVSITRHSAIFAS--- 363
V STP + T S+ P TP ++ +S T T T T S ++ S
Sbjct: 545 VTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPI 604
Query: 364 -ARSNYLHPPMEISITXXXXXXXXXXXXXXXXVSLMLIFVNLPSTWFPS--PVSTSLCQD 534
+ ++ ++S S+ L N ST F S +STS
Sbjct: 605 TSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSSSST 664
Query: 535 LTLSHRVAADSTA 573
T S A++S++
Sbjct: 665 ATSSTSFASESSS 677
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.6 bits (56), Expect = 2.6
Identities = 19/91 (20%), Positives = 36/91 (39%)
Frame = +1
Query: 190 SVKSTPTES*THTQSSPRPKYQTPSSNPTMRLSQCTNS*KTQTKHTVSITRHSAIFASAR 369
S S+P+ S T T +SP + SS+ + S ++S + + + S + S+ +S+
Sbjct: 139 SSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 198
Query: 370 SNYLHPPMEISITXXXXXXXXXXXXXXXXVS 462
S+ + IT S
Sbjct: 199 SSSSSSSSSVPITSSTSSSHSSSSSSSSSSS 229
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 26.2 bits (55), Expect = 3.5
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +1
Query: 460 SLMLIFVNLPSTWFPSPVSTSLCQDLTLSHRVAADSTARS 579
S L NLP W S +ST +S+RV DS +S
Sbjct: 383 STNLYISNLPLHWNESDISTLFKPSKIISNRVLRDSKEQS 422
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 4.6
Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 5/155 (3%)
Frame = +1
Query: 124 SNSHTLSEAVPAPVWAHYLSQRSVKSTPTES*THTQSSPRPKYQTPSSNPTMR--LSQCT 297
SNS S VP+ V H S KS T T + SS + + T S+ TM +S T
Sbjct: 3672 SNSKVTSNKVPSTVSPHSSSISDTKSPATV--TISSSSGQFTHSTFSTGSTMHNTVSHAT 3729
Query: 298 NS*KTQTKHTVSITRHSAIFASARSNYLHPPMEISITXXXXXXXXXXXXXXXXVSLMLIF 477
++ + T + ++ F +++S + + +SL L
Sbjct: 3730 STSSSFTTSHLPTNTLASTFDNSQSIF---SSSSGVPGLSTKSSSLGKIGSSSISLTLSS 3786
Query: 478 VNLPSTWFPSP---VSTSLCQDLTLSHRVAADSTA 573
++ P+P S SL + + S ++ ST+
Sbjct: 3787 SSIRDAELPTPSRMTSPSLSETIPQSSSISEASTS 3821
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 4.6
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +1
Query: 97 PNHVIVYKDSNSHTLSEAVPAPVWAHYLSQRSVKSTPTES 216
P VIV +DS S L+ +P P H L P+ S
Sbjct: 23 PQEVIVIEDSASPRLTPNLPPPFSVHQLQSFVPPQPPSSS 62
>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 326
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 389 LWRSQSLSLPHHVWRHHL 442
LW S S SL H++ HHL
Sbjct: 257 LWYSTSYSLNFHLFYHHL 274
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.0 bits (52), Expect = 8.1
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +1
Query: 151 VPAPVWAHYLSQRSVKST-PTES*THTQSSPRPKYQTPSSNPTMRLSQCTNS*KTQTKHT 327
V APVW++ S T T S S P ++ SS P ++ + T+ T
Sbjct: 121 VTAPVWSNTSVPVSTPETSATSSSEFFTSYPATSSESSSSYPASSTEVASSYSASSTEVT 180
Query: 328 VSITRHSAIFASARSNYLHP 387
S S + A++ S+Y+ P
Sbjct: 181 SSYPASSEV-ATSTSSYVAP 199
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.125 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,433,021
Number of Sequences: 5004
Number of extensions: 49428
Number of successful extensions: 173
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
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