Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_E05
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    28   1.0  
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    26   4.2  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    26   4.2  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    25   5.5  
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    25   7.3  
SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c...    25   7.3  
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual          25   7.3  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    25   9.6  

>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +2

Query: 371  MFFGLSLHLPRRTLLFTQNKLN*QDLLGAIKNINVHTVMTLSVMIMVSGDL*RERLHD 544
            + F  S+ LPR   + T  K    +    +K  N+H + TL  + +  GD  R+   D
Sbjct: 1009 VIFFFSMDLPRNAFMQTLTKFTHLNNTSELKWTNMHALKTLLEISLAHGDKLRDSWKD 1066


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 411 KVRRGRCNESPKNMNSSDCIRKGIKKIKSPASKTTSRC-GNDGKMSNS 271
           +V+R       K  N+SD + K   K K    K +S+   NDGK+  S
Sbjct: 173 RVKRQEPESLKKENNNSDYLPKSAMKQKKGGPKDSSKHPSNDGKIPES 220


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 10   GTRTMLAANQWAGDKRWSWKTENDFVKRFNDAYGNTD 120
            G  T + A+ W G +R  W+  +  V+ ++D  G+ +
Sbjct: 898  GGLTKVQASNWTGTRRQGWEGHHIHVQYWSDLGGSAN 934


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1088

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 432  SLFWVNNKVRRGRCNESPKNMNSSDCIRKGIKKI 331
            S+F+    + RG C +  KNM++   I K +K+I
Sbjct: 967  SIFYKIESMNRGSCLQMLKNMSAMIQILKTVKEI 1000


>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = +1

Query: 25  LAANQWAGDKRWSWKTENDFV--KRFNDAYGNTDAAKAEKDTDEVKDEGFVISLKAKQIR 198
           L  NQW    RW +K    F+  + F    G+T     E  T+EV     ++ L A+ I 
Sbjct: 333 LKLNQWNSVVRWEFKNPQPFLRTREFLWQEGHTAHMTLEGATEEVHQ---ILDLYAR-IY 388

Query: 199 TFVISYELV*GI 234
           T +++  ++ G+
Sbjct: 389 TDLLAVPVIKGV 400


>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/41 (26%), Positives = 16/41 (39%)
 Frame = +3

Query: 297 RICLWS*KLVI*FS*FLFLYNRYCSCFLDSRYIFHDVLCCL 419
           R   W   L+  F   L +  RY SC      +   + CC+
Sbjct: 24  RFVFWFSVLIPIFFIALIIIKRYHSCTYQKNRLLRSIFCCM 64


>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +1

Query: 340 NSFSYTIATVHVF--WTLVTSSTTYFVVYPEQT-*LAGSFRCHKKYQCSHSDD 489
           NSF + + T+HVF   T V + ++Y     EQ+   + S  C    + S SDD
Sbjct: 229 NSFVFEVPTIHVFTSTTQVHTESSYETSSSEQSDDSSSSSSCISDSEESSSDD 281


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 390 NESPKNMNSSDCIRKGIKKIKSPASKTTSRC 298
           N + KN+ +  C+R   +K+K       SRC
Sbjct: 7   NRAHKNIRARSCLRCRRRKVKCDRQYPCSRC 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,024,487
Number of Sequences: 5004
Number of extensions: 36259
Number of successful extensions: 100
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)