Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_E05
         (545 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0130 - 15032348-15033338,15033459-15033517                       30   1.0  
10_08_0120 + 14972010-14973197                                         27   7.4  
08_02_0076 + 11967606-11967905,11969125-11969223,11969813-119741...    27   7.4  

>10_08_0130 - 15032348-15033338,15033459-15033517
          Length = 349

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 189 ADTHFCYKLRVGVRDFINYVYFIGGVSNCYSFYHRYRIC 305
           AD H CY LR    DF+N    +  + N   F +  + C
Sbjct: 272 ADKHHCYGLREACFDFLNSSAILSAIVNTSDFQYLIQSC 310


>10_08_0120 + 14972010-14973197
          Length = 395

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +3

Query: 189 ADTHFCYKLRVGVRDFINYVYFIGGVSNCYSFYHRYRIC 305
           A+ H+CY L+    +F+N    +  + N   F +  + C
Sbjct: 314 AEKHYCYGLKEACFEFLNSSAILSAIVNTSDFLYLIQSC 352


>08_02_0076 +
           11967606-11967905,11969125-11969223,11969813-11974124,
           11974177-11974211
          Length = 1581

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 112 NTDAAKAEKDTDEVKDEGFVISLKAKQIRTFVIS 213
           N DAAK +KDT E        S  A Q+ T++ S
Sbjct: 156 NNDAAKDDKDTTESSLSNTDSSASALQVTTYIAS 189


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,769,733
Number of Sequences: 37544
Number of extensions: 215088
Number of successful extensions: 604
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)