Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_E04
(532 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0153 + 14159820-14162417 30 1.3
05_06_0189 + 26257587-26257791,26257962-26258003,26258064-262584... 30 1.3
05_01_0568 + 4973031-4973161,4973514-4974321,4974394-4974690 30 1.3
02_05_0880 + 32466538-32467083,32467333-32467644,32467731-324682... 29 1.8
08_02_0158 - 13392323-13392545,13392618-13392739 29 2.3
04_04_0457 + 25359486-25359571,25360690-25360782,25361561-253616... 29 3.1
04_04_0137 - 23053148-23053798,23053911-23054146,23054268-230544... 28 5.4
02_02_0100 - 6783821-6784339,6784815-6784984,6785062-6785164,678... 28 5.4
02_03_0394 + 18546089-18546323,18546784-18546986,18547598-185477... 27 7.1
05_03_0354 - 12871313-12871429,12872829-12873143 27 9.4
>11_04_0153 + 14159820-14162417
Length = 865
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 285 RVGGRIPVTPSESFQKRIHGASEKDIVHSGL 377
R+GG I P ESFQ+R ++ D+ G+
Sbjct: 309 RIGGTIGYLPPESFQRRAMATAKSDVFSFGI 339
>05_06_0189 +
26257587-26257791,26257962-26258003,26258064-26258436,
26258515-26258656,26259356-26259514,26259599-26259661,
26259992-26260180
Length = 390
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -3
Query: 323 GFGGGHRDAAPHAPEAPLQRLLP 255
G+G GHR AAP APE Q P
Sbjct: 363 GYGEGHRSAAPPAPEIKDQSQFP 385
>05_01_0568 + 4973031-4973161,4973514-4974321,4974394-4974690
Length = 411
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -3
Query: 341 VDPLLEGFGGGHRDAAPHAPEAPLQRL--LPRAESA 240
V+PLLE G H DAA H + P +RL LPR +A
Sbjct: 331 VEPLLEEDGDEHDDAA-HGGDGPCRRLVELPRVAAA 365
>02_05_0880 +
32466538-32467083,32467333-32467644,32467731-32468201,
32468481-32469246,32469332-32469774
Length = 845
Score = 29.5 bits (63), Expect = 1.8
Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 1/103 (0%)
Frame = -3
Query: 422 GGLHYSPG*TLHGV-IKTGVYDVFFRGAVDPLLEGFGGGHRDAAPHAPEAPLQRLLPRAE 246
G LH SPG +HG + + G P+ G G GHRDA A + R
Sbjct: 58 GDLHGSPG--VHGHHVSPAPHGAGSSGG-SPVFHGAGAGHRDATVFQAVADVSP-PGRGR 113
Query: 245 SARGGYRTRTQRAAENYERSQSTTGNINTFSIPTRHPMDVESA 117
RGG+ R + + + G N +P + P SA
Sbjct: 114 GRRGGHGGGPGRGKRSATQPSARGGRGN--KVPYKPPRPSSSA 154
>08_02_0158 - 13392323-13392545,13392618-13392739
Length = 114
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -3
Query: 308 HRDAAPHAPEAPLQRLLPRAESARGGYRTRTQRAAENYERSQSTTGNINTFSIPTRHP 135
H + A A + P + + +A +G T R+ +N S+S TG+ N F++ HP
Sbjct: 5 HNEVAASATQKP--KRVKKAAKKKG---PPTSRSTDNSMTSRSITGSNNPFALQIEHP 57
>04_04_0457 +
25359486-25359571,25360690-25360782,25361561-25361622,
25361758-25361816,25363624-25363733,25364795-25364829,
25365469-25365546,25365952-25366005,25366277-25366362,
25366468-25366571,25366986-25367054,25367135-25367250,
25367387-25367421,25367512-25367654,25367808-25367930,
25368463-25368556
Length = 448
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/43 (44%), Positives = 22/43 (51%)
Frame = +1
Query: 139 WRVGMLNVFIFPVVL*LRS*FSAALCVRVRYPPRADSARGKSL 267
W +G +NV IFPV L L S F LC +R R KSL
Sbjct: 35 WSLGKINVLIFPVDLFLGSYF---LCFTIRTFQRFAVRTNKSL 74
>04_04_0137 -
23053148-23053798,23053911-23054146,23054268-23054458,
23054587-23056010
Length = 833
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -3
Query: 362 DVFFRGAVDPLLEGFGGGHRDAAPHAPEAPLQRLLPRAESARGG 231
DVF+ AV P +E GG APE + PR E G
Sbjct: 185 DVFYLDAVKPYVEADHGGGGGVVKTAPELAGPKEEPRCEEEDSG 228
>02_02_0100 -
6783821-6784339,6784815-6784984,6785062-6785164,
6785291-6785454,6786781-6786821,6786933-6787129
Length = 397
Score = 27.9 bits (59), Expect = 5.4
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Frame = -3
Query: 494 SVEYLLDGVRVR--GGSQI*---AQVESHGGLHYSPG*TLHGVIKTGVYDVFFRGAVDPL 330
SVE ++ R+R GG Q+ A+ + HGG H S G + HG G Y +R
Sbjct: 208 SVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSNGRSSHG--SGGGYRSSYRSGGAAA 265
Query: 329 LEGFGGG 309
G GGG
Sbjct: 266 SGGGGGG 272
>02_03_0394 +
18546089-18546323,18546784-18546986,18547598-18547787,
18548624-18549015,18549495-18550055
Length = 526
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = -3
Query: 317 GGGHRDAAPHAPEAPLQRLLPRAES-ARGGYRTRTQRAAENYERSQSTTGNINTFSIPT 144
GGG+ D H + L PR E + G +TR + A E S N N S T
Sbjct: 51 GGGYPDLHHHHQQQQLPMAAPRVEKLSAGAEKTRVKSNAILREPSAPKDANGNVISAQT 109
>05_03_0354 - 12871313-12871429,12872829-12873143
Length = 143
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -3
Query: 320 FGGGHRDAAPHAPEAPLQRLLPRA-ESARG 234
FGGG R AAP P +LP A E RG
Sbjct: 50 FGGGGRSAAPVDPAVAQVEVLPSAGERGRG 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,127,606
Number of Sequences: 37544
Number of extensions: 275211
Number of successful extensions: 834
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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