Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_E04
(532 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73899-2|CAA98074.1| 536|Caenorhabditis elegans Hypothetical pr... 111 3e-25
AC006733-5|AAF60485.2| 193|Caenorhabditis elegans Hypothetical ... 33 0.13
AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen prot... 29 2.1
U80442-3|AAB37665.1| 333|Caenorhabditis elegans Hypothetical pr... 28 3.6
U41555-9|AAB37034.1| 646|Caenorhabditis elegans Hypothetical pr... 28 3.6
U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily ass... 28 3.6
D30651-1|BAA21637.1| 646|Caenorhabditis elegans flavoprotein su... 28 3.6
U42833-1|AAA83575.1| 724|Caenorhabditis elegans Hypothetical pr... 28 4.8
AC006679-7|AAK84463.1| 531|Caenorhabditis elegans Lipid deplete... 27 6.3
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr... 27 8.4
>Z73899-2|CAA98074.1| 536|Caenorhabditis elegans Hypothetical
protein ZK829.4 protein.
Length = 536
Score = 111 bits (267), Expect = 3e-25
Identities = 54/87 (62%), Positives = 67/87 (77%)
Frame = +3
Query: 258 QESLERRFGRVGGRIPVTPSESFQKRIHGASEKDIVHSGLDYTMERSARAIMKTAMRFNL 437
QESL + VG PV P+ +F +I GASEKDIVHSGL+YTM+RS AI++TA ++NL
Sbjct: 452 QESLSKA---VGKDCPVEPNAAFAAKIAGASEKDIVHSGLEYTMQRSGEAIIRTAHKYNL 508
Query: 438 GLDLRTAAYANSIEKIFNTYADAGLAF 518
GLD+RTAAYANSIEK++NTY AG F
Sbjct: 509 GLDIRTAAYANSIEKVYNTYRTAGFTF 535
>AC006733-5|AAF60485.2| 193|Caenorhabditis elegans Hypothetical
protein Y32H12A.4 protein.
Length = 193
Score = 33.1 bits (72), Expect = 0.13
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = -1
Query: 316 EGVTGMRPPTRPKRLSRDSCLVPNRHEEGIEHGHKGLQKITSA 188
EGV G+ P TRP+R+S + + P + EG+ H G + ++SA
Sbjct: 93 EGVLGV-PTTRPRRVSLGNAIDPEKVAEGLAHPESG-KSLSSA 133
>AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen protein
102 protein.
Length = 460
Score = 29.1 bits (62), Expect = 2.1
Identities = 19/41 (46%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Frame = -3
Query: 335 PLLEGFGGGHR------DAAPHAPEAPLQRLLPRAESARGG 231
P EG GGG DAA APEA P AE A GG
Sbjct: 342 PAAEGAGGGAEPAGAAPDAAAAAPEAAPAEAAPAAEGAGGG 382
Score = 28.3 bits (60), Expect = 3.6
Identities = 19/42 (45%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Frame = -3
Query: 335 PLLEGFGGGHR-------DAAPHAPEAPLQRLLPRAESARGG 231
P EG GGG DAA APEA P AE A GG
Sbjct: 309 PAAEGAGGGAEPAGAAAPDAAAAAPEAAPAEAAPAAEGAGGG 350
>U80442-3|AAB37665.1| 333|Caenorhabditis elegans Hypothetical
protein T20F5.4 protein.
Length = 333
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 239 RGGYRTRTQRAAENYERSQSTTGNINTFSIPTRHPMDV 126
RG ++T QR +T+ FS P RHP+D+
Sbjct: 151 RGAWKTSPQRIRPKSMFDSTTSNTEYLFSKPPRHPIDL 188
>U41555-9|AAB37034.1| 646|Caenorhabditis elegans Hypothetical
protein C03G5.1 protein.
Length = 646
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 312 PSESFQKRIHGASEKDIVHSGLDYTME 392
P+E Q+R+ G SE ++ +G+D T E
Sbjct: 353 PAEQLQQRLPGISETAMIFAGVDVTKE 379
>U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily
assigned gene nameprotein 213 protein.
Length = 1437
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/39 (33%), Positives = 26/39 (66%)
Frame = -3
Query: 263 LLPRAESARGGYRTRTQRAAENYERSQSTTGNINTFSIP 147
++P+AE+ + G+R+R Q A E ++++ I+T S+P
Sbjct: 242 MIPKAEAIKEGHRSRMQNAQERASKAET----ISTASMP 276
>D30651-1|BAA21637.1| 646|Caenorhabditis elegans flavoprotein
subunit of complex II protein.
Length = 646
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 312 PSESFQKRIHGASEKDIVHSGLDYTME 392
P+E Q+R+ G SE ++ +G+D T E
Sbjct: 353 PAEQLQQRLPGISETAMIFAGVDVTKE 379
>U42833-1|AAA83575.1| 724|Caenorhabditis elegans Hypothetical
protein ZK430.8 protein.
Length = 724
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 428 SHGGLHYSPG*TLHGVIKTGVYDVFFRGAVDPLLEGF 318
+HGG + G V K+G + F G VDP++ GF
Sbjct: 511 THGGFFFGDG-----VFKSG--KILFEGGVDPIIRGF 540
>AC006679-7|AAK84463.1| 531|Caenorhabditis elegans Lipid depleted
protein 7 protein.
Length = 531
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 107 NISQLIL-RPSDGVSVC*TYLYSQWCFDC 190
NIS ++ RP D + V Y+ QW FDC
Sbjct: 356 NISHHVVDRPMDKLEVNRLYVQPQWVFDC 384
>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical
protein F26C11.3 protein.
Length = 1317
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 240 TRRVSNTDTKGCRKLRAQSKHHWEYKYV*HTDTPSDG 130
TR + TDT+GC+K S ++ + T TPS G
Sbjct: 735 TRTETTTDTEGCKKTSTISSSSSKFS-ITPTPTPSSG 770
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,555,849
Number of Sequences: 27780
Number of extensions: 209501
Number of successful extensions: 609
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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