Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_E02
(391 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 30 0.11
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 30 0.11
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 27 0.77
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 26 1.8
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac... 26 1.8
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 26 2.4
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 25 3.1
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 25 3.1
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 25 5.5
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran... 25 5.5
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 24 7.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 24 7.2
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces... 24 9.5
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 24 9.5
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 24 9.5
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 30.3 bits (65), Expect = 0.11
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 303 QHHQLHLAIEPFRAPELLSQPSMMG 377
Q QLHL +E R PE++ PS++G
Sbjct: 585 QAFQLHLNVEQIRVPEVIFSPSIVG 609
Score = 25.0 bits (52), Expect = 4.1
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +3
Query: 108 AAAERMRLLSRLAAAGDDFGTQDSDWDAYKSI 203
A+ + ++ R + D+FG +D DW Y +
Sbjct: 489 ASEQPIQKRKRKDQSEDNFGARDEDWKVYHDV 520
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 30.3 bits (65), Expect = 0.11
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -2
Query: 282 VRALVTLPPVPSTAHHLPPSQSPP 211
VR L T+PP PS H PPS PP
Sbjct: 42 VRGL-TIPPPPSVDHSAPPSGPPP 64
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 27.5 bits (58), Expect = 0.77
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -2
Query: 318 ATDDVGQLQGEAVRALVTLPPVPSTAHHLPPSQSPPHDLY 199
A DVG L+ RA +LPP P ++ P + S H LY
Sbjct: 8 ALSDVGGLRDITSRANNSLPPTPDSS---PAAPSKKHKLY 44
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 1.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 261 PPVPSTAHHLPPSQSPPH 208
PP P T HH P ++ P H
Sbjct: 161 PPFPPTQHHHPHTRPPHH 178
>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 446
Score = 26.2 bits (55), Expect = 1.8
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +3
Query: 87 GPQPSPAAAAERMRLLSRLAAAGDDFGTQDSDWDAYKSISREADSDSEAD 236
GPQ S AA ++RLL DDF QD+ + Y I + S ++ D
Sbjct: 6 GPQRSTKTAA-KLRLLPSTEEF-DDFRRQDTGREVYSQIPQIEGSTAKRD 53
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 25.8 bits (54), Expect = 2.4
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3
Query: 330 EPFRAPELLSQPSMMG 377
E FRAPE L QPS +G
Sbjct: 253 ERFRAPEALFQPSALG 268
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 3.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 321 LAIEPFRAPELLSQPSMMGN 380
L E F APE+L P MMG+
Sbjct: 255 LGTECFSAPEVLFNPEMMGS 274
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 3.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 258 PVPSTAHHLPPSQSPPHDLYFCKRPNRNLAFR 163
PVP+ A PP ++ PH + +P RN+ R
Sbjct: 328 PVPTPA---PPVKTSPHPASYRPQPTRNVEVR 356
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 24.6 bits (51), Expect = 5.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 261 PPVPSTAHHLPPSQSPPHDL 202
P P TA LPP +S PH L
Sbjct: 220 PSRPGTAITLPPYESDPHML 239
>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
transcription factor Ams2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 697
Score = 24.6 bits (51), Expect = 5.5
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = -2
Query: 261 PPVPSTAHHLPPSQSPPHDLYFCKRPNRNLAFRNHHRRRPVSTVIAYV 118
PP P+T S SP F P++N+ H + +S ++ V
Sbjct: 587 PPKPTTLQKQQQSPSPWRSELFLSDPDQNVLTPRHKPKFDLSKALSSV 634
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 24.2 bits (50), Expect = 7.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 315 LHLAIEPFRAPELLSQPSMMGNLE 386
+HLA E +PE+ P + GN++
Sbjct: 204 MHLAEETATSPEISDAPPLSGNVD 227
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 24.2 bits (50), Expect = 7.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2
Query: 261 PPVPSTAHHLPPSQSPP 211
PP+PS A +P S PP
Sbjct: 158 PPIPSKAPPIPSSLPPP 174
>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 497
Score = 23.8 bits (49), Expect = 9.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 216 PPHDLYFCKRPNRNLAFRNHHRRRPVSTVIAYV 118
P +DL FC R L++ + + VS +IA V
Sbjct: 300 PAYDLNFCNNFIRKLSWSSSTKSNYVSLLIAMV 332
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 23.8 bits (49), Expect = 9.5
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = -2
Query: 240 HHLPPSQSPPHDLYFCKRPNRNLAFRNHHRRRPVSTVIAYVRPR 109
H PP Q P H C + + + + P+S V A+ + R
Sbjct: 256 HSAPPLQMPQHRAVECVITGKPAIYLDPVTQLPISNVQAFQQVR 299
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 23.8 bits (49), Expect = 9.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 172 CVPKSSPAAASLDSNRIRS 116
C PK P A+S+++NR S
Sbjct: 134 CEPKEKPDASSINTNRSSS 152
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,357,081
Number of Sequences: 5004
Number of extensions: 23275
Number of successful extensions: 93
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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