Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_E01
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    38   6e-04
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc...    37   0.002
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc...    37   0.002
SPAC57A10.09c |||High-mobility group non-histone chromatin prote...    36   0.003
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    26   2.8  
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      25   4.9  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    25   4.9  
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...    25   8.5  
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun...    25   8.5  

>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 38.3 bits (85), Expect = 6e-04
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
 Frame = +3

Query: 63  RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK---VTEIAKKGGEMWKSMK--DKS 227
           ++K +   +PKRP SAY L+  + R +IK E  G K   V E+ K   E W S+   D+ 
Sbjct: 108 KRKARDPAQPKRPPSAYNLFQKNQRSEIK-ESLGEKSNDVKEVNKAMHEKWGSLSEDDRK 166

Query: 228 IWXXXXXXXXXQYAKDLESYNAN 296
            +          Y +++ +YNA+
Sbjct: 167 TYEEEASKLREAYEEEMAAYNAS 189


>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 13/52 (25%), Positives = 30/52 (57%)
 Frame = +3

Query: 57  AIRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKS 212
           ++RK    T++  RP +A++L+       +   +P +  ++++K  GEMW++
Sbjct: 92  SLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 13/52 (25%), Positives = 30/52 (57%)
 Frame = +3

Query: 57  AIRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKS 212
           ++RK    T++  RP +A++L+       +   +P +  ++++K  GEMW++
Sbjct: 92  SLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPAC57A10.09c |||High-mobility group non-histone chromatin
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 35.9 bits (79), Expect = 0.003
 Identities = 18/51 (35%), Positives = 30/51 (58%)
 Frame = +3

Query: 63  RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 215
           RKK+  T  PKR MSA+M +    RE++K+++P     ++    G+ WK +
Sbjct: 9   RKKDPNT--PKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKEL 57


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +3

Query: 81  TDKPKRPMSA--YMLWLNSAREQIKSEHPGLKVTEIAKKGGEMW 206
           TDKP +  S     + L+   E  +S+HP + V  +   G E W
Sbjct: 119 TDKPSQSPSGNEVQVGLDMYNEGYRSDHPVIMVPGVISSGLESW 162


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 400 MRKVKNRRRKANDLPIFKTCLFILSNLPGLN 492
           +RK  N R   N + I K+C+ I+  L GL+
Sbjct: 128 LRKPCNNRTFPNYMGIVKSCILIVLTLAGLS 158


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 263 LFFSLGCFLFPNTFIFH*FPHFTSFFGYFSDFQPRM 156
           LF+ L C   P  F  H     T+F  YF+   P +
Sbjct: 211 LFYDLNCQDIPEFFEDHMSEFMTAFLNYFTYTNPSL 246


>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 84  DKPKRPMSAYMLWLNSAREQIKSE 155
           D PK+  +AY+L LN + E  KSE
Sbjct: 218 DMPKQVKNAYILILNVSLEYEKSE 241


>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
           Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 251

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 337 EGKRARKQPPLNPRKRRKSLTMRKVKN 417
           +GKR +K     P+K+++  + +K KN
Sbjct: 225 KGKREKKDEEEKPKKKKQKKSSKKEKN 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,820,234
Number of Sequences: 5004
Number of extensions: 33042
Number of successful extensions: 103
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)