Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_D24
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   205   4e-54
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   202   2e-53
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    42   8e-05
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    29   0.58 
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    27   1.8  
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|...    26   3.1  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    25   5.4  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    25   5.4  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    25   7.2  
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch...    25   9.5  
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1...    25   9.5  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  205 bits (500), Expect = 4e-54
 Identities = 97/146 (66%), Positives = 113/146 (77%)
 Frame = +1

Query: 1   ARGAVVAVEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPR 180
           A   +  +E+PADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPR
Sbjct: 63  AARVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPR 122

Query: 181 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 360
           L++V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LLAR
Sbjct: 123 LIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAR 182

Query: 361 EVLRLRGVLSRDQRWDVVVDLFFYRD 438
           EVLR+RG LSR   WDV+ DL+FYRD
Sbjct: 183 EVLRVRGTLSRSAPWDVMPDLYFYRD 208


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  202 bits (494), Expect = 2e-53
 Identities = 98/146 (67%), Positives = 112/146 (76%)
 Frame = +1

Query: 1   ARGAVVAVEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPR 180
           A   +  +E+PADV VISSR +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPR
Sbjct: 64  AARVIATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPR 123

Query: 181 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 360
           L+IV DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LLAR
Sbjct: 124 LIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAR 183

Query: 361 EVLRLRGVLSRDQRWDVVVDLFFYRD 438
           EVLRLRG +SR   W+V+ DL+FYRD
Sbjct: 184 EVLRLRGNISRTTAWEVMPDLYFYRD 209


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 41.5 bits (93), Expect = 8e-05
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = +1

Query: 175 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 354
           P L+++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239

Query: 355 AR 360
           +R
Sbjct: 240 SR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
 Frame = +1

Query: 97  HTGATPIAGRFTPGAFTNQIQAAFR--EPRLLIVLDPAQDHQPI---TEASYVNIPVIAL 261
           +  A P  G       T+ I A F+  +P + ++     D   +   T A    +  + L
Sbjct: 29  YVNAAPHLGHLYSLVLTDAI-ARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQL 87

Query: 262 CNTDSPLRFVDIAIPCNTKSSHSI 333
           C+ +S  RF D+A+  NTK +H I
Sbjct: 88  CDRNSK-RFADLAVAANTKFTHFI 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 331 IGLMWWLLAREVLRLRGVLSRDQRWD 408
           IGL W L  REV R + + +R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
           Cut9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 228 FSNWLMILSRVQNNQQPWFA 169
           F N L+++ + Q+N++PW A
Sbjct: 498 FQNALLLVKKTQSNEKPWAA 517


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 340 MWWLLAREVLRLRGVLSRDQRW 405
           +WW L+R+  R    LSR  +W
Sbjct: 68  IWWSLSRKATRFYRWLSRSLKW 89


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = +1

Query: 259 LCNTDSPLRFVD--IAIPCNTKSSHSI-GLMWWLLAREVLRLRGVLSRDQRWDV 411
           L   D  ++  D  +A   N    HS+ G  +W+ A EV+ L G  +    W V
Sbjct: 138 LTTKDGTIKLADFGVATKINALEDHSVVGSPYWM-APEVIELVGATTASDIWSV 190


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 463 ALPSHSLQGHDRRTSQRQHPNAGH 392
           A+ SHS + H +RT+Q+      H
Sbjct: 546 AISSHSSESHSKRTTQQPKSTPNH 569


>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 163 AFREPRLLIVLDPAQDHQPITEASY 237
           A R+ RLL+++ P   H P+    Y
Sbjct: 62  AGRDDRLLLIVGPCSLHDPVAAKEY 86


>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 386

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 404 QRWSR-LRTPRSLNTSRANNHHIRPMECEDLVLHGIAMSTNLR 279
           + W++  ++ R L+T +   + IRP   E L+L G+A    L+
Sbjct: 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,910,526
Number of Sequences: 5004
Number of extensions: 35031
Number of successful extensions: 109
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)