Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_D24
         (536 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   197   5e-51
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   197   5e-51
07_03_0771 - 21381276-21381461,21381583-21381733,21381823-213820...    28   4.1  
02_05_0938 + 32901143-32901215,32901841-32901982,32902243-329023...    28   5.4  
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386...    27   7.2  
04_04_0907 + 29304830-29305030,29305296-29305547                       27   9.5  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  197 bits (480), Expect = 5e-51
 Identities = 89/146 (60%), Positives = 111/146 (76%)
 Frame = +1

Query: 1   ARGAVVAVEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPR 180
           A   +VA+E+P D+ V S+R +GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPR
Sbjct: 65  AARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPR 124

Query: 181 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 360
           LLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K   SIG ++WLLAR
Sbjct: 125 LLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLAR 184

Query: 361 EVLRLRGVLSRDQRWDVVVDLFFYRD 438
            VL++RG +    +WDV+VDLFFYRD
Sbjct: 185 MVLQMRGTILPGHKWDVMVDLFFYRD 210


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  197 bits (480), Expect = 5e-51
 Identities = 89/146 (60%), Positives = 112/146 (76%)
 Frame = +1

Query: 1   ARGAVVAVEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPR 180
           A   +VA+E+P D+ V S+R +GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPR
Sbjct: 65  AARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPR 124

Query: 181 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 360
           LLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K  +SIG ++WLLAR
Sbjct: 125 LLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLAR 184

Query: 361 EVLRLRGVLSRDQRWDVVVDLFFYRD 438
            VL++RG +    +WDV+VDLFFYRD
Sbjct: 185 MVLQMRGTILPGHKWDVMVDLFFYRD 210


>07_03_0771 -
           21381276-21381461,21381583-21381733,21381823-21382060,
           21382161-21382368,21382650-21382777,21382892-21383029,
           21383160-21384012
          Length = 633

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -3

Query: 255 YYWNVDI*SFSNWLMILSRVQNNQQPWFAECGLDLVSKCTRSETSSN 115
           Y    D+ SF   ++ +   Q N  P+FAE   DLVS   R  T  N
Sbjct: 535 YSTKSDVFSFGILILEIVTGQRNSGPYFAEQNEDLVSLVWRHWTEGN 581


>02_05_0938 +
           32901143-32901215,32901841-32901982,32902243-32902314,
           32902573-32902644,32902711-32902782,32902913-32902948,
           32903001-32903072,32903319-32903387,32903483-32903554,
           32903668-32903739,32903838-32903909,32904153-32904224,
           32904470-32904541,32904623-32904694,32904782-32904853,
           32904911-32905003,32905150-32905218,32905315-32905386,
           32905479-32905552,32905643-32905771,32905966-32906331,
           32906584-32906954,32907522-32907890
          Length = 884

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 401 VGMLSLTCSSIVTLKRVRRKSNKLRNRLSSLPKWKRRRQFMR 526
           VGM+  T S +  LK +    NKL   +  L  W    Q++R
Sbjct: 104 VGMIPSTLSQLPNLKILDLAQNKLNGEIPRLIYWNEVLQYLR 145


>03_02_0792 +
           11236785-11237337,11237711-11238261,11238446-11238628,
           11238768-11238966,11239055-11239761
          Length = 730

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +1

Query: 97  HTGATPIAGRFTPGAFTNQIQAAFREPRLLI--VLDPAQDHQPITEASYVNIPVIALCNT 270
           HT +T    R TP AF +   AA  E R+ +  +   ++      EA Y +I V  + + 
Sbjct: 270 HTLSTGETVRVTPAAFDSVTPAAIDETRVAVAAIRQKSEFSDVRVEAQYRHIEVFDMRSP 329

Query: 271 DSPLR 285
           + P++
Sbjct: 330 EQPMQ 334


>04_04_0907 + 29304830-29305030,29305296-29305547
          Length = 150

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 199 PAQDHQPITE-ASYVNIPVIALCNTDSPLRFVDIAIPCNT 315
           P  D   + E A+  NIP+I L + D P    +IA  C T
Sbjct: 23  PESDRPRLAEVATDSNIPLIDLASPDKPRVIAEIAQACRT 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,152,309
Number of Sequences: 37544
Number of extensions: 251729
Number of successful extensions: 705
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)